Chrysanthenum transcriptome database

Information for unigene UN88490

FASTA Sequence
Unigene ID: UN88490Length: 1905 SSR
GGCTACAACTTCCATGAAATGGAAGTACTATCATTTTATGAAAGGTAAGACATACATCCTTATAAGCCATCGTTGACTCGTTTAAT
TTACTTGCAGTTATACCTCCGAAATTTAACAGTACATTGCAACACAAAAAGTACAGGCAAGTCAGGATGAAATGAACCGGCTCATT
CACGTCTAGATTCCTATTAATATACAAAACCACAAATCACTGGCGAGGCACAGCTGGTGGGGTCGGCTGATGGTTTTGCCCATAGA
ATCCAATACCCGGTGGCCTGTAGTATCCGCTACTTGTAGTTTGTTGCTGTAGCTGTTGCTGCGGCTGAGGTGGCGGATGGGCGGGC
CGCATCATACCCATTGCAACATGTGGCATTGAGGGTGGCGGCGGCGGTAGGCTGCTAGCACCGTATACAAAGGGCATACCATTACC
ACCCATCATCATGCCGCCAGAAGACTGAACGAACTGATTCGAGGGAGAATTTGTGCCAACTGTGGATGGTGGTAGAGGAGCTTGTG
GTAGTGGTGGAAATGTGGTTTGGTTGGCTTGTGACATTGAAGTAAAATAATCAGAATTGTTCATATCTGAATTTGACATTGGGTTT
TCTAGCTTGGGTCTTTTCTCGGGGGGAAATATATTGGTGGCGAATACAGATGAGTTAAAGCCGTTGCTGATTGAGGCGGCTTCTTC
TGCAACTAGAGAAGAAAGAACAGATGTAAGCATTTGTGCAGAGGATGTTGAAGCAGCAAGTTTTGCCGCCATTGCAGCGGCAGCAG
CCTTTTTACTTTCTTCTTCACTAACATGTGTAGTACTTCCAACAGACATGGATTGAGGCAGACTCTCAACAGCTGGGGCTTCACCA
GCGGGAAGGGAAGAAGGTGATGTCAGTCTCTTCCTCAATTTTACAGCATGGTCAATTTGATTTCGAGCAACCTGCAACTGACTGTG
AATAACATCTAGCCTCAATTCCTGATCCTGGAGTGCTTCTTTAAGCTGTGAAATCAAGGACGATCTAGTCTTTTCAGCAGTTTCAA
GTTGGTTGACACATTCTTGAAGTACATTTTCTTGCTCCTGGATTTCATCTAGCAATGAAGATCCTTGTTGGACTCCTTGAGTTTCA
ATTTCTCTTTCCAAATCTCCAAACCGGTTAACTGCACCTTCACAGTTGTTTAATGCGGTATCTTCAGTAGTATTCTCATCATGTAC
CAAATGGAAAGCAGTGATAATCTTTTCCGGGGCACCACCAACAGCCAATTTAAGTCTCAGTGAGTTAGAATCCCTCTTCACTATCT
TGATAGGGTTAGGGTTCGGGGTAGAAGATGAAGTCTTTCCATTGGTAGCCGATTGAGGGAGGGGACTTTTACCAAGCATTTCCTCT
CTCAAGTTCTGACCCCGCGATCCGAAAACCCTCCTGTCCTCCCATATGCCAACCAGTCTTGATGCTGCTTTCTTTCCATTATCATC
ACCATGTTCATTAACATGCTTGAGGGTTGAAGGAATGACCTTCCAAAATTCATTCACAAACTCATTGCCTTTTCGCCTACTATTTT
GCAATATATCATTGGCCAAATACAGAAAAGAAACTTGCTGCGCCTGCTGGGCAGATTTAAATGATTTATGCCATATTTCAACAATC
TGTTTGGCTTTCTTCCTGTGTGAAATACATGAACGAGACAATGACTCTATACTTTGTTGAGAACTGTTGAGTTTAAACAGCTTGTC
GGACAACATTTTTCCATCAAAAACGTCATCACTCATCCTGCCAGCTATGTAAGTAGATTCAAGAATCCCAGATGGATGGATGGAAA
AAATATGAGGTTTGTGTAAGGTGAAGAAGAAGAAGAAGAAGATGATTTAGAGAGATGTGGACCATTCAAGTTTGTGTTCTTGTTTC
ATGTTTTGTTTCT

Annotation (GO annotation)
GenBank top hits (Blast detail)Scoree value
XP_003521863 PREDICTED: uncharacterized protein LOC100814308 [Glycine max]10251e-108
XP_002267006 PREDICTED: uncharacterized protein LOC100250127 [Vitis vinifera]9084e-095
CBI31180 unnamed protein product [Vitis vinifera]9059e-095
XP_002530962 conserved hypothetical protein [Ricinus communis]8654e-090
XP_003624786 Regulation of nuclear pre-mRNA domain-containing protein 1B [Medicago truncatula]7874e-081

Swiss-Prot top hits (Blast detail)Scoree value
Q9CSU0 Regulation of nuclear pre-mRNA domain-containing protein 1B2503e-020
Q9NQG5 Regulation of nuclear pre-mRNA domain-containing protein 1B2476e-020
Q0P5J9 Regulation of nuclear pre-mRNA domain-containing protein 1A2243e-017
Q96P16 Regulation of nuclear pre-mRNA domain-containing protein 1A2243e-017
Q8VDS4 Regulation of nuclear pre-mRNA domain-containing protein 1A2243e-017

TrEMBL top hits (Blast detail)Scoree value
F6HMV0 Putative uncharacterized protein9174e-096
B9SY93 Putative uncharacterized protein8654e-090
G7L2P6 Regulation of nuclear pre-mRNA domain-containing protein 1B7875e-081
B9SSM4 Putative uncharacterized protein7339e-075
F6H4N7 Putative uncharacterized protein7176e-073

Arabidopsis top hits (Blast detail)Scoree value
AT5G65180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 3523 Blast hits to 3241 proteins in 333 species: Archae - 25; Bacteria - 251; Metazoa - 1575; Fungi - 421; Plants - 142; Viruses - 17; Other Eukaryotes - 1092 (source: NCBI BLink).6231e-064
AT5G10060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65180.1); Has 4531 Blast hits to 4161 proteins in 412 species: Archae - 14; Bacteria - 404; Metazoa - 1999; Fungi - 666; Plants - 262; Viruses - 36; Other Eukaryotes - 1150 (source: NCBI BLink).6222e-064
AT3G26990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink).5593e-057
AT5G65180.2 unknown protein2978e-027