Chrysanthenum transcriptome database

Information for unigene UN70174

FASTA Sequence

Unigene ID: UN70174	Length: 2122	SSR
ACAGGTAGTGCTCAAAAAGGGTAAAGCAGTAACATAATGGTAAATGATTGCAGTCAGAAACAAAATGCTACAAAAAGAATAATGAC ATAACTTAAGTTCAAATCCACCCTTAGGCTACCGATACATAAAAGCACAAACGTTGGCTACTTGCATACCAAATTATAACAATTCA AAGAAGACCTCTACGTCTCTTGTAGTCACTTACTGACAGAGTCAATGCATGCCTCCTCCCATCATTCTCCGGGACCTGGCACCCAA CTGTTGCTTCGATCCTCTGTTTACGAGCCATGAACCCGGCCTGGACACCATGGGGCCCACCAAACTTCTGAAGCGCCGTCAATGAA ATAGGAATTTCGAAATCATGCAACACGTTTGACTCTGTTCCTTGATCCACCGGAGCACTAGTATCCACCAACTTCCCTGCATCAGC AGCAGCTTCCAGTGCGGCTGCAGTAGCCACGATGCCTACACCATCAGGACCCACCACTGCAGCAGCTTGGGTGTCTCCTCCATTTG CTTCGGCTGCAGCTTCACCAGGCTTTGAAACATAGTAATTCCTGGACCGAGTCCATCTCCTTGAAAATGGATCATAACCCGCTTCA CCAGCCTTCAGACCTGCAGCCAAAGGCTTCACTTCGGACGCATTCTTAAAATTTTCAACCCGATTCTTTCTATTCATTTCTGCAAG TTTTATTGCCTTGGCATCTTTCTGTTGAGGCTGGCGAGACGCTTCTAGTTCTTCAAGCTTTGCTTTGATCTTCTCAACTTCTGCGT CATTATGCTTCATTTGAGCCACTTCCAAGTCTCTTCTAAGCCGATCTTTCTCAGCTGCAACATTCATAGGTCTCCTGATTGTCGAC TTTTTCTCTTGTAACATTTGCTTCACGGTCTCTGCAGAGTATACAAATGAGTTGGTTTTTTCTATGGCCTCACGTTTTTCCAACAC CTCCTGTTTACTAGGCATCCTTCCACCATGACGTTCTACCTCTCGGATTAATTGGTCAAACTCTTCTTTGATGGGTGGTGAGTCAG AAATCATAGCCATCTGCCACCTGGCAGCGGAACTTTCATTTCCCCAAACAACATTCAGATACTTATGTGTCATCCTGTTCTCTAGC TTGTATTGTCTGTCAGGGTCAGCTGCATCCACATTTCTGACTATGCAAAGCCTATAAATTGGCCCGGTTTTTGACTTTCCAATACC GACCCTCACAAAACAACCTACAATCAGATCCTCAAAGAAAGGCTCCATAAACCATTTTGCCAGTTTTGACCTTCGAATAGTGATTC CTTTAACATCCTCGTACGTTAAATTTGTGGATTCCTCTGATATTTTTACGTTATCACCTTCTTCCTCTTCACCTTGGGACTCTTCA TCACTACGGCTTGAGGTGTCTATAGTGAATCCCCCCCTGCGTTTGGCTGCAGAGTCTTGATCTCTACGTTTCCAACTAGACTCGGG ATCTTGCTGCCTTAACCTTTTCCTGAGACGTAATTCATTCAGTTTTTCATCTTTTGCCAGTTTTGCCCTGTCAGCCGACCGAGCAG AAGAACGCATTGTCCGGTTTGCCGTGTGAGGTGGTGAGGTGTCTTTTCTCGACTGATTCGACTTGTCTTTCTGCTTCTTTATATTG TTTTTCAAATCCTTATCATTTCTCTTGTTTGAACGGTCAGCCAGTATCATCTCTCTATCAAGCTCCGACATTTTTGCAAGCCTTCT TCTATCTTCTTCGCCTTTGTAAAGATCACTTCCAACAGAATCATCATCACTGTCACCTTCACGATCATACCTACCATCATCATCAT CATCGTCCTCGTCATCTTCACGGCTGCTGCTATGTTCATCCTCATCATCCTCATCATCATCTCGTTCTACCGGATCCAATCTTTTC TTTAAAGGAACTTGAGAAGCAGAAGGCTTCCTGCTAGCATACGCACGGTCATCATCTGAATCATCATCTCTTGAATCACTTCCGTC ATCGGAATATGAGCCCCTACGCCGTCGCCTAGATGGTGGTGGTGAGTCATCATCTCTTGCGGTTCTTCCCGCAGCTTCAAGAAGCA TGTCATCCAAGTCATCCATGATTATCAATCAAATTCCAATCTTGCAATAACCTTATGC

Annotation (GO annotation)

GenBank top hits (Blast detail)	Score	e value
XP_002519028 RNA polymerase-associated protein RTF1, putative [Ricinus communis]	1390	6e-151
XP_002305685 PAF1 complex component [Populus trichocarpa]	1369	2e-148
XP_003625428 RNA polymerase-associated protein RTF1-like protein [Medicago truncatula]	1328	9e-144
XP_003575794 PREDICTED: RNA polymerase-associated protein RTF1 homolog [Brachypodium distachyon]	1323	4e-143
NP_176299 plus-3 domain-containing protein [Arabidopsis thaliana]	1295	6e-140

Swiss-Prot top hits (Blast detail)	Score	e value
O94667 RNA polymerase-associated protein C651.09c	217	2e-016
Q92541 RNA polymerase-associated protein RTF1 homolog	200	2e-014
A2AQ19 RNA polymerase-associated protein RTF1 homolog	200	2e-014
Q5RAD5 RNA polymerase-associated protein RTF1 homolog (Fragment)	200	2e-014
Q9W261 RNA polymerase-associated protein Rtf1	178	7e-012

TrEMBL top hits (Blast detail)	Score	e value
B9RZ59 RNA polymerase-associated protein RTF1, putative	1390	6e-151
B9H268 PAF1 complex component	1369	2e-148
G7KYI5 RNA polymerase-associated protein RTF1-like protein	1328	1e-143
I1IHW2 Uncharacterized protein	1323	4e-143
A3CI27 Putative uncharacterized protein	1313	5e-142

Arabidopsis top hits (Blast detail)	Score	e value
AT1G61040.1 VIP5 (vernalization independence 5); DNA binding	1296	1e-142