Chrysanthenum transcriptome database

Information for unigene UN06540

FASTA Sequence
Unigene ID: UN06540Length: 2082 SSR
TGAAATTGTAGTGTCTCTCTTTCAAGAATTTTTATTTGATCATCATATGAACCACAAAGACGCCCGGTCCTTGAGTTCTTATTCGG
GGGAAGAATCGTCTGTGCTGAACCACGAGTGAACATCCTATGACCCTCTAGGGTGTAAACCTCCAACAGATTTTGAATTCTTTGAT
CAAAAGCAACCGCCTTTCCCATCTCATAGTCTTTTACAAGCACTTGTCTCTCAGCATGGCCCTGATCCACCAAGACATTCAGTACT
GTGGGACTATCAGATTGTATAACTGATAGCGTTGTTGGGTGATTTGTATGGGGAAGCTTTTGACTTTCAATTTGAAACCTTGGTAT
AGAAAAATCAAATATAATGATCTTAAGGTTGTGATAATTTGCTTCTCGAGCGCATGATCTCAGTAACAAAAAATCTTTATGATCTG
TCACTATGAAAGAATTAAACAGCTTCCCGATCGCATGTTCGACTGCAACAGCCCATTTGTCACCATGAGTTAATGCCAAGTGTGAT
CCTATAGGGCCAATAGGGGGTTTTCTGAATCTGCGGTGGTTTCTCTCAATAACCTGCAGAAGATTGGGAACTCCACGTCCTCCAAA
TGCTGTGACCTTGTGTGTCTGATTTAGACGCAGGGTCCGAATGCGCCCCTGACTCTCATTGGCCTTATTCTCAAGATCATTTAGCT
CGGAAATTATATTTTTAAGTTCATCCCTCGCTGCTCCCAGCCTTTCTGATAAATCCTCCTCGATGTTCTTCAGCCTCTGACATTCT
GATTCAGCATCCCTTATCTCATCTTGAAGGTCCTTTATTTTGTTCTCCATTTCAAATTCTTCAGCCTGTGTGTCTTTAATTTGTTG
CTCATTTGCATCGTTGATTTGTTGCTGAAGTGACTTTATCTGTCTTTCCATCTTAGCAATGTTGTTACTTCTGCGATCATATTCTT
GGTGCAGCTCAATTTTCTCCCTTTTCGCCTTAGAAACTTTTTGTTCCAGTTCGCTCTGCCTTTTTTTGGCCTTCGAAGTACTTTCC
ATCAAGACAGCACTTTGAGCTTTCTTTTTGTTAAGAGAATCCTGCAAGTCTGCAACTTTTGCAATTTGTTGATCAATTTTAGCTTG
ACATTGAGGTATCCGACCTTCCAGTTTTTTAATCCTTGCAGTATCTTCTTGGATTTTTTTGTCTATGTCATATACCATTGACCATG
CACATTTCTTTCTTAACAGCTGAATCTGCTGAGAAATTTCTTCTATATGCTCCATGCTTTTAATTTTTCCTCGCAATTCATCTAGT
TCCTTCTCTATAGGTGCTATTGACCTTTCCAACTCAACAACCTCGCCATTAGCCTTGTCAAGATTGTCCCTGACACTTTTGAGCAG
ATCATCTACCTGACTTAAAAGTGTGGCCTTGAAAAAGAACTTAAACTTATCTTTGTCATTTCCTGAATGCAAAAACTCTCTGCTCT
TGTCCTGGCTCATTACTACACAAGGATTTTCAACATCAATATTAAAATGTTCCACAAGCTCACGGATGTCTTCTCTTCGGGTAGCT
ACTTTTTTTCCTTGTTGATCTTTAAGAACACTAGTACTGCTGGATTCTGTGATCCTTCGCTCTACGATTATGACATCTCCAAACAC
ATCATGCTTAAAAGCATCCTCCCCCCGATTCGTAATTTCCACATGTACAAGGGCGTAGCTACAACCAGTCTTAATAAACTCCTTCA
ACGTAGTGGCCCTATCGGTACTCTTGGCACGACATCCAAACGCAATACACAACGCCGTAAGGATCGCACTCTTTCCACTGCCGTTT
TGTCCGGTGATGAAATTGACATGATCAGCGAGATTAATTTCCATATGACTATGACACATGAAATTCTCTACTCGGATTTTGCTGAT
TATGCCTGCTAATAAACCCTTACTAGGGTTTGACATCTTACTTTTTTTAGGGTTTCTTTTGTGAGGTGTTTGGGTGATGATGATGA
TGATGTGTTTAATTAGTTAATAATTGGTGTTTTGGTTTTGGTTTTTATGATTGGGGAGGAGATTAATGAGTGGTTTTTGTAGATTT
GGGGGAAGAATTGGCGGG

Annotation (GO annotation)
GenBank top hits (Blast detail)Scoree value
XP_002278113 PREDICTED: structural maintenance of chromosomes protein 6-like [Vitis vinifera]19945e-221
CBI38567 unnamed protein product [Vitis vinifera]19462e-215
XP_002510971 structural maintenance of chromosomes 6 smc6, putative [Ricinus communis]19239e-213
XP_002866437 hypothetical protein ARALYDRAFT_496305 [Arabidopsis lyrata subsp. lyrata]18611e-205
NP_200954 protein MIM [Arabidopsis thaliana]18602e-205

Swiss-Prot top hits (Blast detail)Scoree value
Q6P9I7 Structural maintenance of chromosomes protein 66851e-070
Q96SB8 Structural maintenance of chromosomes protein 66616e-068
Q924W5 Structural maintenance of chromosomes protein 66544e-067
Q802R8 Structural maintenance of chromosomes protein 66195e-063
Q54I56 Structural maintenance of chromosomes protein 64734e-046

TrEMBL top hits (Blast detail)Scoree value
B9H073 Predicted protein19462e-215
D7U753 Putative uncharacterized protein19462e-215
B9R9U6 Structural maintenance of chromosomes 6 smc6, putative19231e-212
D7MV22 Putative uncharacterized protein18612e-205
Q9FII7 Protein MIM18602e-205

Arabidopsis top hits (Blast detail)Scoree value
AT5G61460.1 MIM (hypersensitive to MMS, irradiation and MMC); ATP binding18605e-208
AT5G07660.1 structural maintenance of chromosomes (SMC) family protein17881e-199
AT2G32240.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 221693 Blast hits to 95553 proteins in 2574 species: Archae - 2848; Bacteria - 44259; Metazoa - 97474; Fungi - 15490; Plants - 8386; Viruses - 1229; Other Eukaryotes - 52007 (source: NCBI BLink).1392e-008
AT4G27595.1 unknown protein1373e-008
AT1G68790.1 LINC3 (LITTLE NUCLEI3)1241e-006