Arabidopsis blast output of UN70441
BLASTX 7.6.2
Query= UN70441 /QuerySize=1788
(1787 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G07810.1 | Symbols: | heterogeneous nuclear r... 344 2e-094
TAIR9_protein||AT3G07810.2 | Symbols: | heterogeneous nuclear r... 340 2e-093
TAIR9_protein||AT5G47620.1 | Symbols: | heterogeneous nuclear r... 264 1e-070
TAIR9_protein||AT5G47620.2 | Symbols: | heterogeneous nuclear r... 264 1e-070
TAIR9_protein||AT4G26650.1 | Symbols: | RNA recognition motif (... 261 2e-069
TAIR9_protein||AT4G26650.2 | Symbols: | RNA recognition motif (... 261 2e-069
TAIR9_protein||AT5G55550.1 | Symbols: | RNA recognition motif (... 241 2e-063
TAIR9_protein||AT5G55550.3 | Symbols: | RNA recognition motif (... 241 2e-063
TAIR9_protein||AT5G55550.2 | Symbols: | RNA recognition motif (... 241 2e-063
TAIR9_protein||AT5G47620.3 | Symbols: | heterogeneous nuclear r... 223 4e-058
TAIR9_protein||AT4G14300.1 | Symbols: | heterogeneous nuclear r... 164 2e-040
TAIR9_protein||AT2G33410.1 | Symbols: | heterogeneous nuclear r... 163 4e-040
TAIR9_protein||AT1G58470.1 | Symbols: ATRBP1, RBP1 | ATRBP1 (ARA... 121 2e-027
TAIR9_protein||AT3G13224.2 | Symbols: | RNA recognition motif (... 117 2e-026
TAIR9_protein||AT3G13224.1 | Symbols: | RNA recognition motif (... 108 1e-023
TAIR9_protein||AT5G40490.1 | Symbols: | RNA recognition motif (... 96 5e-020
>TAIR9_protein||AT3G07810.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr3:2492875-2495052
FORWARD
Length = 495
Score = 344 bits (880), Expect = 2e-094
Identities = 213/460 (46%), Positives = 262/460 (56%), Gaps = 32/460 (6%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSP-GPIR 1611
RGFGFVVF DPAVAE V+ EKH IDGR VEAKKAVPRDDQ ++N ++ SIQGSP GP R
Sbjct: 47 RGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGR 106
Query: 1610 TKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKAL 1431
T+KIFVGGL SSVTESDFKTYF+QFG TDVVVMYDHNTQRPRGFGFITY+SEE+V+K L
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Query: 1430 LRTFHELNGKMVEVKRAVPKESSPSPNRNQI-SGFNHGLSRVNSFLNAYTQGYNP----N 1266
L+TFHELNGKMVEVKRAVPKE SP P+R+ + +G+++G++RVN+ LN Y QG+NP
Sbjct: 167 LKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGG 226
Query: 1265 FGARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXXXYGRVMS 1086
+G RMDGRFSPV R+G+ +S S Y M +N D YGR MS
Sbjct: 227 YGLRMDGRFSPVGAGRSGFANYS-SGYGMNVNFD--QGLPTGFTGGTNYNGNVDYGRGMS 283
Query: 1085 PMYGANSNRYADPIXXXXXXXXXXXXXXXXXXLNSTSHNLWG-NGNQNFTTSSP-SLSNF 912
P Y N+NR+ + +S + NLWG NG N+ ++ S SN
Sbjct: 284 PYYIGNTNRFGPAV-----GYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNT 338
Query: 911 LTPGNGSGG--LGAIWGNSNTSQXXXXXXXXXXXXXXXXXXXXXXEESTIGY------RR 756
G+ SG L +GNS + ES G R
Sbjct: 339 YMGGSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAAR 398
Query: 755 SSGNSIIDPAYSYGVIDDGEIXXXXXXXXXXXXXXXXXXXFYADPTWRASSPELDVPDLF 576
+ G + P+ S+ Y+DPTWR+ +PE + P F
Sbjct: 399 NPGANKAAPSSSF---SSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPF 455
Query: 575 GYSLGSG--ASD-GIPKNSVGYVG-YSVANRS-NRGIAA* 471
Y +G G +SD +S GYVG YSV R NRGIA *
Sbjct: 456 SYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRGIAT* 495
>TAIR9_protein||AT3G07810.2 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr3:2492875-2495102
FORWARD
Length = 496
Score = 340 bits (871), Expect = 2e-093
Identities = 211/456 (46%), Positives = 260/456 (57%), Gaps = 32/456 (7%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSP-GPIR 1611
RGFGFVVF DPAVAE V+ EKH IDGR VEAKKAVPRDDQ ++N ++ SIQGSP GP R
Sbjct: 47 RGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGR 106
Query: 1610 TKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKAL 1431
T+KIFVGGL SSVTESDFKTYF+QFG TDVVVMYDHNTQRPRGFGFITY+SEE+V+K L
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Query: 1430 LRTFHELNGKMVEVKRAVPKESSPSPNRNQI-SGFNHGLSRVNSFLNAYTQGYNP----N 1266
L+TFHELNGKMVEVKRAVPKE SP P+R+ + +G+++G++RVN+ LN Y QG+NP
Sbjct: 167 LKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGG 226
Query: 1265 FGARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXXXYGRVMS 1086
+G RMDGRFSPV R+G+ +S S Y M +N D YGR MS
Sbjct: 227 YGLRMDGRFSPVGAGRSGFANYS-SGYGMNVNFD--QGLPTGFTGGTNYNGNVDYGRGMS 283
Query: 1085 PMYGANSNRYADPIXXXXXXXXXXXXXXXXXXLNSTSHNLWG-NGNQNFTTSSP-SLSNF 912
P Y N+NR+ + +S + NLWG NG N+ ++ S SN
Sbjct: 284 PYYIGNTNRFGPAV-----GYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNT 338
Query: 911 LTPGNGSGG--LGAIWGNSNTSQXXXXXXXXXXXXXXXXXXXXXXEESTIGY------RR 756
G+ SG L +GNS + ES G R
Sbjct: 339 YMGGSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAAR 398
Query: 755 SSGNSIIDPAYSYGVIDDGEIXXXXXXXXXXXXXXXXXXXFYADPTWRASSPELDVPDLF 576
+ G + P+ S+ Y+DPTWR+ +PE + P F
Sbjct: 399 NPGANKAAPSSSF---SSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPF 455
Query: 575 GYSLGSG--ASD-GIPKNSVGYVG-YSVANRS-NRG 483
Y +G G +SD +S GYVG YSV R NRG
Sbjct: 456 SYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRG 491
>TAIR9_protein||AT5G47620.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr5:19302548-19304278
REVERSE
Length = 432
Score = 264 bits (674), Expect = 1e-070
Identities = 140/248 (56%), Positives = 174/248 (70%), Gaps = 12/248 (4%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSPGPIRT 1608
RGFGFVVF DP VAERVV KH+IDG+ VEAKKAVPRDD + N +S S+QGSPGP +
Sbjct: 47 RGFGFVVFADPNVAERVVLLKHIIDGKIVEAKKAVPRDDHVVFN-KSNSSLQGSPGPSNS 105
Query: 1607 KKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKALL 1428
KKIFVGGLASSVTE++FK YF QFG+ITDVVVMYDH TQRPRGFGFI+Y+SEE+VDK L
Sbjct: 106 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Query: 1427 RTFHELNGKMVEVKRAVPKESSPSPNRNQISGFNHGLSRVNSFLNAYTQGYNPN----FG 1260
+TFHELNGKMVEVK AVPK+ + + RNQ++ + G SR++S LN YTQG++P+ +G
Sbjct: 166 KTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYG 225
Query: 1259 ARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXXXYGRVMSPM 1080
+ + R+SP NR G+ PF Y + LN + +GR SP
Sbjct: 226 VKPEVRYSPAVGNRGGFSPFG-HGYGIELNFE------PNQTQNYGSGSSGGFGRPFSPG 278
Query: 1079 YGANSNRY 1056
Y A+ R+
Sbjct: 279 YAASLGRF 286
>TAIR9_protein||AT5G47620.2 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr5:19302548-19304278
REVERSE
Length = 432
Score = 264 bits (674), Expect = 1e-070
Identities = 140/248 (56%), Positives = 174/248 (70%), Gaps = 12/248 (4%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSPGPIRT 1608
RGFGFVVF DP VAERVV KH+IDG+ VEAKKAVPRDD + N +S S+QGSPGP +
Sbjct: 47 RGFGFVVFADPNVAERVVLLKHIIDGKIVEAKKAVPRDDHVVFN-KSNSSLQGSPGPSNS 105
Query: 1607 KKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKALL 1428
KKIFVGGLASSVTE++FK YF QFG+ITDVVVMYDH TQRPRGFGFI+Y+SEE+VDK L
Sbjct: 106 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Query: 1427 RTFHELNGKMVEVKRAVPKESSPSPNRNQISGFNHGLSRVNSFLNAYTQGYNPN----FG 1260
+TFHELNGKMVEVK AVPK+ + + RNQ++ + G SR++S LN YTQG++P+ +G
Sbjct: 166 KTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYG 225
Query: 1259 ARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXXXYGRVMSPM 1080
+ + R+SP NR G+ PF Y + LN + +GR SP
Sbjct: 226 VKPEVRYSPAVGNRGGFSPFG-HGYGIELNFE------PNQTQNYGSGSSGGFGRPFSPG 278
Query: 1079 YGANSNRY 1056
Y A+ R+
Sbjct: 279 YAASLGRF 286
>TAIR9_protein||AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445552-13447592 FORWARD
Length = 456
Score = 261 bits (665), Expect = 2e-069
Identities = 155/327 (47%), Positives = 200/327 (61%), Gaps = 43/327 (13%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRS------TGSIQGS 1626
RGFGF+VF DP+VAERV+ +KH+IDGRTVEAKKAVPRDDQQ+L + + S G+
Sbjct: 56 RGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGN 115
Query: 1625 PGPIRTKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEES 1446
G RTKKIFVGGL SS+TE++FK YFDQFG I DVVVMYDHNTQRPRGFGFIT++SEES
Sbjct: 116 GGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEES 175
Query: 1445 VDKALLRTFHELNGKMVEVKRAVPKE-SSPSPNRNQISGF--NHGL----SRVNSFLNAY 1287
VD L +TFHELNGKMVEVKRAVPKE SS +PNR+ + G+ N+G+ S NS+ N++
Sbjct: 176 VDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSF 235
Query: 1286 TQGYNPNFGARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXX 1107
GYN N GRFSP+ R + S++ +GLN +
Sbjct: 236 PPGYNNN-NLGSAGRFSPIGSGRNAF-----SSFGLGLNQE-------LNLNSNFDGNTL 282
Query: 1106 XYGRVMSPMY--GANSNRYADPIXXXXXXXXXXXXXXXXXXLNSTSHNLWGNGNQNFTTS 933
Y R+ Y A+ NRY PI N ++ +LWGN + +S
Sbjct: 283 GYSRIPGNQYFNSASPNRYNSPI----------GYNRGDSAYNPSNRDLWGNRSD---SS 329
Query: 932 SPSLSNFLTPGN--GSGGLGAIWGNSN 858
P + ++ GN G+ GL ++ ++N
Sbjct: 330 GPGWNLGVSVGNNRGNWGLSSVVSDNN 356
>TAIR9_protein||AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445265-13447592 FORWARD
Length = 453
Score = 261 bits (665), Expect = 2e-069
Identities = 155/327 (47%), Positives = 200/327 (61%), Gaps = 43/327 (13%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRS------TGSIQGS 1626
RGFGF+VF DP+VAERV+ +KH+IDGRTVEAKKAVPRDDQQ+L + + S G+
Sbjct: 53 RGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGN 112
Query: 1625 PGPIRTKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEES 1446
G RTKKIFVGGL SS+TE++FK YFDQFG I DVVVMYDHNTQRPRGFGFIT++SEES
Sbjct: 113 GGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEES 172
Query: 1445 VDKALLRTFHELNGKMVEVKRAVPKE-SSPSPNRNQISGF--NHGL----SRVNSFLNAY 1287
VD L +TFHELNGKMVEVKRAVPKE SS +PNR+ + G+ N+G+ S NS+ N++
Sbjct: 173 VDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSF 232
Query: 1286 TQGYNPNFGARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXX 1107
GYN N GRFSP+ R + S++ +GLN +
Sbjct: 233 PPGYNNN-NLGSAGRFSPIGSGRNAF-----SSFGLGLNQE-------LNLNSNFDGNTL 279
Query: 1106 XYGRVMSPMY--GANSNRYADPIXXXXXXXXXXXXXXXXXXLNSTSHNLWGNGNQNFTTS 933
Y R+ Y A+ NRY PI N ++ +LWGN + +S
Sbjct: 280 GYSRIPGNQYFNSASPNRYNSPI----------GYNRGDSAYNPSNRDLWGNRSD---SS 326
Query: 932 SPSLSNFLTPGN--GSGGLGAIWGNSN 858
P + ++ GN G+ GL ++ ++N
Sbjct: 327 GPGWNLGVSVGNNRGNWGLSSVVSDNN 353
>TAIR9_protein||AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502077-22503658 REVERSE
Length = 449
Score = 241 bits (613), Expect = 2e-063
Identities = 147/315 (46%), Positives = 180/315 (57%), Gaps = 32/315 (10%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSP---GP 1617
RGFGF+VF DP V+ERV+ +KH+IDGRTVEAKKAVPRDDQQ+L ++ SP G
Sbjct: 47 RGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGG 106
Query: 1616 IRTKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDK 1437
RTKKIFVGGL SS+TE +FK YFDQFG I DVVVMYDHNTQRPRGFGFIT++S+++VD+
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 1436 ALLRTFHELNGKMVEVKRAVPKESSPSPNRNQ--ISGFNHGLSRVNSFLNAYTQGYNPNF 1263
L +TFHELNGK+VEVKRAVPKE SP N SG N+G N+Y + P
Sbjct: 167 VLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGP 226
Query: 1262 G-----ARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXXXYG 1098
G + RFSPV G + S + +GLN D Y
Sbjct: 227 GFYNSLGPVGRRFSPV----IGSGRNAVSAFGLGLNHD---LSLNLNPSCDGTSSTFGYN 279
Query: 1097 RVMSPMY--GANSNRYADPIXXXXXXXXXXXXXXXXXXLNSTSHNLWGNGNQNFTTSSPS 924
R+ S Y GA+ NRY PI NS + +LWGN T+ P
Sbjct: 280 RIPSNPYFNGASPNRYTSPI----------GHNRTESPYNSNNRDLWGNRTD---TAGPG 326
Query: 923 LSNFLTPGNGSGGLG 879
+ ++ GN G G
Sbjct: 327 WNLNVSNGNNRGNWG 341
>TAIR9_protein||AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502135-22503658 REVERSE
Length = 461
Score = 241 bits (613), Expect = 2e-063
Identities = 147/315 (46%), Positives = 180/315 (57%), Gaps = 32/315 (10%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSP---GP 1617
RGFGF+VF DP V+ERV+ +KH+IDGRTVEAKKAVPRDDQQ+L ++ SP G
Sbjct: 47 RGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGG 106
Query: 1616 IRTKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDK 1437
RTKKIFVGGL SS+TE +FK YFDQFG I DVVVMYDHNTQRPRGFGFIT++S+++VD+
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 1436 ALLRTFHELNGKMVEVKRAVPKESSPSPNRNQ--ISGFNHGLSRVNSFLNAYTQGYNPNF 1263
L +TFHELNGK+VEVKRAVPKE SP N SG N+G N+Y + P
Sbjct: 167 VLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGP 226
Query: 1262 G-----ARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXXXYG 1098
G + RFSPV G + S + +GLN D Y
Sbjct: 227 GFYNSLGPVGRRFSPV----IGSGRNAVSAFGLGLNHD---LSLNLNPSCDGTSSTFGYN 279
Query: 1097 RVMSPMY--GANSNRYADPIXXXXXXXXXXXXXXXXXXLNSTSHNLWGNGNQNFTTSSPS 924
R+ S Y GA+ NRY PI NS + +LWGN T+ P
Sbjct: 280 RIPSNPYFNGASPNRYTSPI----------GHNRTESPYNSNNRDLWGNRTD---TAGPG 326
Query: 923 LSNFLTPGNGSGGLG 879
+ ++ GN G G
Sbjct: 327 WNLNVSNGNNRGNWG 341
>TAIR9_protein||AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22502135-22503658 REVERSE
Length = 461
Score = 241 bits (613), Expect = 2e-063
Identities = 147/315 (46%), Positives = 180/315 (57%), Gaps = 32/315 (10%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSP---GP 1617
RGFGF+VF DP V+ERV+ +KH+IDGRTVEAKKAVPRDDQQ+L ++ SP G
Sbjct: 47 RGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGG 106
Query: 1616 IRTKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDK 1437
RTKKIFVGGL SS+TE +FK YFDQFG I DVVVMYDHNTQRPRGFGFIT++S+++VD+
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 1436 ALLRTFHELNGKMVEVKRAVPKESSPSPNRNQ--ISGFNHGLSRVNSFLNAYTQGYNPNF 1263
L +TFHELNGK+VEVKRAVPKE SP N SG N+G N+Y + P
Sbjct: 167 VLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGP 226
Query: 1262 G-----ARMDGRFSPVSVNRTGYPPFSPSNYNMGLNSDXXXXXXXXXXXXXXXXXXXXYG 1098
G + RFSPV G + S + +GLN D Y
Sbjct: 227 GFYNSLGPVGRRFSPV----IGSGRNAVSAFGLGLNHD---LSLNLNPSCDGTSSTFGYN 279
Query: 1097 RVMSPMY--GANSNRYADPIXXXXXXXXXXXXXXXXXXLNSTSHNLWGNGNQNFTTSSPS 924
R+ S Y GA+ NRY PI NS + +LWGN T+ P
Sbjct: 280 RIPSNPYFNGASPNRYTSPI----------GHNRTESPYNSNNRDLWGNRTD---TAGPG 326
Query: 923 LSNFLTPGNGSGGLG 879
+ ++ GN G G
Sbjct: 327 WNLNVSNGNNRGNWG 341
>TAIR9_protein||AT5G47620.3 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr5:19302548-19304106
REVERSE
Length = 372
Score = 223 bits (567), Expect = 4e-058
Identities = 119/220 (54%), Positives = 151/220 (68%), Gaps = 12/220 (5%)
Frame = -1
Query: 1703 VEAKKAVPRDDQQILNSRSTGSIQGSPGPIRTKKIFVGGLASSVTESDFKTYFDQFGIIT 1524
VEAKKAVPRDD + N +S S+QGSPGP +KKIFVGGLASSVTE++FK YF QFG+IT
Sbjct: 15 VEAKKAVPRDDHVVFN-KSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMIT 73
Query: 1523 DVVVMYDHNTQRPRGFGFITYESEESVDKALLRTFHELNGKMVEVKRAVPKESSPSPNRN 1344
DVVVMYDH TQRPRGFGFI+Y+SEE+VDK L +TFHELNGKMVEVK AVPK+ + + RN
Sbjct: 74 DVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRN 133
Query: 1343 QISGFNHGLSRVNSFLNAYTQGYNPN----FGARMDGRFSPVSVNRTGYPPFSPSNYNMG 1176
Q++ + G SR++S LN YTQG++P+ +G + + R+SP NR G+ PF Y +
Sbjct: 134 QMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGFSPFG-HGYGIE 192
Query: 1175 LNSDXXXXXXXXXXXXXXXXXXXXYGRVMSPMYGANSNRY 1056
LN + +GR SP Y A+ R+
Sbjct: 193 LNFE------PNQTQNYGSGSSGGFGRPFSPGYAASLGRF 226
>TAIR9_protein||AT4G14300.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr4:8231179-8232785
FORWARD
Length = 412
Score = 164 bits (414), Expect = 2e-040
Identities = 88/208 (42%), Positives = 127/208 (61%), Gaps = 17/208 (8%)
Frame = -1
Query: 1778 GFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQI---LNSRSTGSIQGSPGPIRT 1608
GFV+F DP+V +RV++EKH ID R V+ K+A+ R++QQ+ + +T G +T
Sbjct: 50 GFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKT 109
Query: 1607 KKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKALL 1428
KKIFVGGL ++T+ +F+ YF+ +G +TDV +MYD T RPRGFGF++++SE++VD L
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 1427 RTFHELNGKMVEVKRAVPKESSPSPNRNQISGFNHGLSRVNSFLNAYTQGYNPN---FGA 1257
+TFH+L+GK VEVKRA+PK+++P + G G Y QGY N +
Sbjct: 170 KTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSG---------GY-QGYGGNESSYDG 219
Query: 1256 RMD-GRFSPVSVNRTGYPPFSPSNYNMG 1176
RMD RF G P + S Y G
Sbjct: 220 RMDSNRFLQHQSVGNGLPSYGSSGYGAG 247
>TAIR9_protein||AT2G33410.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative | chr2:14156085-14157435
FORWARD
Length = 405
Score = 163 bits (411), Expect = 4e-040
Identities = 86/204 (42%), Positives = 121/204 (59%), Gaps = 7/204 (3%)
Frame = -1
Query: 1778 GFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQ---GSPGPIRT 1608
GFV F DPAV +RV+++KH ID R V+ K+A+ R++Q T + S +RT
Sbjct: 50 GFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRT 109
Query: 1607 KKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKALL 1428
KKIFVGGL ++T +F+ YF+ +G ++D V+M D TQRPRGFGF++++SE+SVD L
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 1427 RTFHELNGKMVEVKRAVPKESSPSPNRNQISGFNHGLSRVNSFLNAYTQGYNPNFGARMD 1248
+TFH+LNGK VEVKRA+PK+++P SG G F G + G
Sbjct: 170 KTFHDLNGKQVEVKRALPKDANP----GIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDS 225
Query: 1247 GRFSPVSVNRTGYPPFSPSNYNMG 1176
R+ +GYPP+ S Y G
Sbjct: 226 NRYMQPQNTGSGYPPYGGSGYGTG 249
>TAIR9_protein||AT1G58470.1 | Symbols: ATRBP1, RBP1 | ATRBP1 (ARABIDOPSIS
THALIANA RNA-BINDING PROTEIN 1); RNA binding / single-stranded RNA
binding | chr1:21727374-21728539 FORWARD
Length = 361
Score = 121 bits (302), Expect = 2e-027
Identities = 57/93 (61%), Positives = 73/93 (78%)
Frame = -1
Query: 1613 RTKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKA 1434
RTKKIFVGGL+S+ TE +FK+YF++FG TDVVVM+D T RPRGFGF+TY+SE+SV+
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Query: 1433 LLRTFHELNGKMVEVKRAVPKESSPSPNRNQIS 1335
+ FHEL+ K VEVKRA+PKE S N N ++
Sbjct: 178 MQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVN 210
>TAIR9_protein||AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256621 FORWARD
Length = 359
Score = 117 bits (293), Expect = 2e-026
Identities = 71/196 (36%), Positives = 112/196 (57%), Gaps = 27/196 (13%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSPGPIRT 1608
RGFGF+ F DP+V ++V+++ HVI+G+ VE K+ +P+ G+ I+T
Sbjct: 60 RGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK-----------GAGGNQSKDIKT 108
Query: 1607 KKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKALL 1428
KKIFVGG+ S+VTE + K +F ++G + + V+ DH T R RGFGF+ ++SEE VD+ L
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 1427 R-TFHELNGKMVEVKRAVPKESSPSPNRNQISGFNHGLSRVNSFLNAYTQGYNPNFGARM 1251
+ ++ VE+K+A PK+S NR+ S +H R ++ ++Y P G
Sbjct: 169 KGNMIDMADTQVEIKKAEPKKSL---NRSPPSYGSHPRGRSSN--DSYASYGGPYGG--F 221
Query: 1250 DGRFSPVSVNRTGYPP 1203
DG + G+PP
Sbjct: 222 DGGY--------GHPP 229
>TAIR9_protein||AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256014 FORWARD
Length = 232
Score = 108 bits (269), Expect = 1e-023
Identities = 51/119 (42%), Positives = 78/119 (65%), Gaps = 11/119 (9%)
Frame = -1
Query: 1787 RGFGFVVFLDPAVAERVVKEKHVIDGRTVEAKKAVPRDDQQILNSRSTGSIQGSPGPIRT 1608
RGFGF+ F DP+V ++V+++ HVI+G+ VE K+ +P+ G+ I+T
Sbjct: 60 RGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK-----------GAGGNQSKDIKT 108
Query: 1607 KKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEESVDKAL 1431
KKIFVGG+ S+VTE + K +F ++G + + V+ DH T R RGFGF+ ++SEE VD+ L
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
>TAIR9_protein||AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16225483-16227423 FORWARD
Length = 424
Score = 96 bits (238), Expect = 5e-020
Identities = 58/133 (43%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Frame = -1
Query: 1628 SPGPIRTKKIFVGGLASSVTESDFKTYFDQFGIITDVVVMYDHNTQRPRGFGFITYESEE 1449
S +TKKIFVGG+ SSV + +FK +F QFG + + +M DH+T R RGFGF+TYESE+
Sbjct: 123 SSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
Query: 1448 SVDKALLRTFH-ELNGKMVEVKRAVPKESSPSPNRNQISGFNHGLSRVNSFLNAYTQGYN 1272
VD L + EL+G VE+K+A PK+ PN G SR N F Y GY
Sbjct: 183 MVDHLLAKGNRIELSGTQVEIKKAEPKK----PNSVTTPSKRFGDSRSN-FGGGYGDGYG 237
Query: 1271 PNFGARMDGRFSP 1233
G G P
Sbjct: 238 GGHGGGYGGPGGP 250
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,324,715,523
Number of Sequences: 33410
Number of Extensions: 14324715523
Number of Successful Extensions: 630540388
Number of sequences better than 0.0: 0
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