BLASTX 7.6.2

Query= UN56529 /QuerySize=891
        (890 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT1G45230.1 | Symbols:  | defective chloroplasts ...    218   5e-057
TAIR9_protein||AT1G45230.2 | Symbols:  | defective chloroplasts ...    215   4e-056
TAIR9_protein||AT3G46630.1 | Symbols:  | FUNCTIONS IN: molecular...    130   1e-030
TAIR9_protein||AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DM...    102   3e-022
TAIR9_protein||AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRP...     49   4e-006
TAIR9_protein||AT5G62440.1 | Symbols:  | Encodes a protein DOMIN...     48   8e-006

>TAIR9_protein||AT1G45230.1 | Symbols:  | defective chloroplasts and leaves
        protein-related / DCL protein-related | chr1:17169874-17171381 REVERSE

          Length = 220

 Score =  218 bits (554), Expect = 5e-057
 Identities = 99/119 (83%), Positives = 110/119 (92%)
 Frame = -2

Query: 550 WEDQILEDTVPLVGFVRMILHSGKYASGERLSPEHERTILERLLPHHPESEKKIGCGVSY 371
           WED+ILE TVPLVGFVRMILHSGKYA+ +RLSPEHERTI+E LLP+HPE EKKIGCG+ Y
Sbjct: 100 WEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDY 159

Query: 370 ITVGYHPDFESSRCLFIVRTDGEMVDFSYWKCIKGLIRKNYPLYADSFILRHFRRRRHN 194
           I VG+HPDFESSRC+FIVR DGE+VDFSYWKCIKGLI+K YPLYADSFILRHFR+RR N
Sbjct: 160 IMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218

>TAIR9_protein||AT1G45230.2 | Symbols:  | defective chloroplasts and leaves
        protein-related / DCL protein-related | chr1:17169874-17171381 REVERSE

          Length = 220

 Score =  215 bits (546), Expect = 4e-056
 Identities = 98/119 (82%), Positives = 109/119 (91%)
 Frame = -2

Query: 550 WEDQILEDTVPLVGFVRMILHSGKYASGERLSPEHERTILERLLPHHPESEKKIGCGVSY 371
           WED+ILE TVPLVGFVRMILHSGKYA+ +RLSPEHERTI+E LLP+HPE EKKIGCG+ Y
Sbjct: 100 WEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDY 159

Query: 370 ITVGYHPDFESSRCLFIVRTDGEMVDFSYWKCIKGLIRKNYPLYADSFILRHFRRRRHN 194
           I V +HPDFESSRC+FIVR DGE+VDFSYWKCIKGLI+K YPLYADSFILRHFR+RR N
Sbjct: 160 IMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218

>TAIR9_protein||AT3G46630.1 | Symbols:  | FUNCTIONS IN: molecular_function
        unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
        chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
        growth stages; BEST Arabidopsis thaliana protein match is: defective
        chloroplasts and leaves protein-related / DCL protein-related
        (TAIR:AT1G45230.1); Has 102 Blast hits to 102 proteins in 23 species:
        Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 88; Viruses
        - 0; Other Eukaryotes - 7 (source: NCBI BLink). |
        chr3:17181138-17182346 REVERSE

          Length = 208

 Score =  130 bits (326), Expect = 1e-030
 Identities = 58/114 (50%), Positives = 78/114 (68%)
 Frame = -2

Query: 547 EDQILEDTVPLVGFVRMILHSGKYASGERLSPEHERTILERLLPHHPESEKKIGCGVSYI 368
           E +IL D  P+    + ILHS +Y  GERL  E E+ ++E+LLP+HP S+ KIGCG+ +I
Sbjct:  91 EAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFI 150

Query: 367 TVGYHPDFESSRCLFIVRTDGEMVDFSYWKCIKGLIRKNYPLYADSFILRHFRR 206
            V  HP F  SRCLF+VRTDG  +DFSY KC++  +R  YP +A+ FI  HF+R
Sbjct: 151 MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKR 204

>TAIR9_protein||AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 |
        NRPD1B; DNA binding / DNA-directed RNA polymerase |
        chr2:16715089-16723406 FORWARD

          Length = 1977

 Score =  102 bits (254), Expect = 3e-022
 Identities = 51/158 (32%), Positives = 79/158 (50%)
 Frame = -2

Query:  673 TTSGGGQYEGGAADLLRKPVVKEXXXXXXXXXXXXXXXXXXWEDQILEDTVPLVGFVRMI 494
            +  GG  ++G      R P  ++                   E ++L D  P++  +R I
Sbjct: 1694 SNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKI 1753

Query:  493 LHSGKYASGERLSPEHERTILERLLPHHPESEKKIGCGVSYITVGYHPDFESSRCLFIVR 314
            +H   Y  G+ +S + +  +LE++L  HP+ E K+G GV +ITV  H  F  SRC F+V 
Sbjct: 1754 MHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVS 1813

Query:  313 TDGEMVDFSYWKCIKGLIRKNYPLYADSFILRHFRRRR 200
            TDG   DFSY K +   + K YP  A+ FI ++F + R
Sbjct: 1814 TDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPR 1851

>TAIR9_protein||AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 |
        NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA
        polymerase | chr1:23355329-23361126 REVERSE

          Length = 1454

 Score =  49 bits (115), Expect = 4e-006
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
 Frame = -2

Query:  505 VRMILHSGKYASGERLSPEHERTILERLLPHHPESEKKIGCGVSYITVGYHPDFESSRCL 326
            ++ ILHS  Y   E L+ E +  +++ +L  HP S +KIG GV  I V      +S  C 
Sbjct: 1346 LKRILHS--YEINELLN-ERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGDSC-CF 1401

Query:  325 FIVRTDGEMVDFSYWKCIKG 266
             +VR DG   DFSY KC+ G
Sbjct: 1402 EVVRIDGTFEDFSYHKCVLG 1421

>TAIR9_protein||AT5G62440.1 | Symbols:  | Encodes a protein DOMINO1 that belongs
        to a plant-specific gene family sharing a common motif present in the
        tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is
        located in the nucleus.  Arabidopsis embryos carrying the domino1
        mutation grow slowly in comparison with wild type embryos and reach
        only the globular stage at desiccation. The primary defect of the
        mutation at the cellular level is the large size of the nucleolus that
        can be observed soon after fertilization in the nuclei of both the
        embryo and the endosperm.  DOMINO1 might have a role in ribosome
        biogenesis and in determining the rate of cell division. |
        chr5:25072620-25073917 REVERSE

          Length = 203

 Score =  48 bits (112), Expect = 8e-006
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -2

Query: 436 ILERLLPHHPESEKKIGCGVSYITVGYHPDFESSRCLFIVRTDGEMVDFSYWKCIKGLI 260
           +L+ +   H E EKKIG G+    V  HP ++ SRC F+VR D    DFS+ KC+  ++
Sbjct: 105 LLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWK-SRCFFLVREDDTADDFSFRKCVDQIL 162

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,362,025,791
Number of Sequences: 33410
Number of Extensions: 11362025791
Number of Successful Extensions: 478496618
Number of sequences better than 0.0: 0