SwissProt blast output of UN54596
BLASTX 7.6.2
Query= UN54596 /QuerySize=675
(674 letters)
Database: Uniprot/SwissProt;
537,505 sequences; 190,795,139 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5TM50|RPA12_MACMU DNA-directed RNA polymerase I subunit RPA1... 83 1e-015
sp|Q9P1U0|RPA12_HUMAN DNA-directed RNA polymerase I subunit RPA1... 82 2e-015
sp|Q1XHV8|RPA12_PANTR DNA-directed RNA polymerase I subunit RPA1... 82 2e-015
sp|O94703|RPA12_SCHPO DNA-directed RNA polymerase I subunit RPA1... 79 3e-014
sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA1... 78 4e-014
sp|Q791N7|RPA12_MOUSE DNA-directed RNA polymerase I subunit RPA1... 76 2e-013
sp|Q6MFY5|RPA12_RAT DNA-directed RNA polymerase I subunit RPA12 ... 75 3e-013
sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA1... 65 4e-010
sp|Q56254|RPOM_THECE DNA-directed RNA polymerase subunit M OS=Th... 56 2e-007
sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M OS=Me... 53 2e-006
sp|O27369|RPOM_METTH DNA-directed RNA polymerase subunit M OS=Me... 52 3e-006
sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RP... 50 9e-006
>sp|Q5TM50|RPA12_MACMU DNA-directed RNA polymerase I subunit RPA12 OS=Macaca
mulatta GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 83 bits (204), Expect = 1e-015
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = -2
Query: 580 SIHQSDFMFCEICGTMLSF-NKKSYVHCPLCKSRKKIKDFDGMEIKYTVSEEQIRRELGL 404
S QSD FC CG++L + V C C ++DF+G +K +V Q+ + +
Sbjct: 11 SSFQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPM 70
Query: 403 SSIEISGERTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGY 248
S E G + + RCP+C ++G+ YHT+Q RSADEGQT+FY C NC +
Sbjct: 71 SVEE--GPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF 120
>sp|Q9P1U0|RPA12_HUMAN DNA-directed RNA polymerase I subunit RPA12 OS=Homo
sapiens GN=ZNRD1 PE=1 SV=1
Length = 126
Score = 82 bits (202), Expect = 2e-015
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = -2
Query: 580 SIHQSDFMFCEICGTMLSF-NKKSYVHCPLCKSRKKIKDFDGMEIKYTVSEEQIRRELGL 404
S QSD FC CG++L + V C C ++DF+G +K +V Q+ + +
Sbjct: 11 SSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPM 70
Query: 403 SSIEISGERTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGY 248
S E G + + RCP+C ++G+ YHT+Q RSADEGQT+FY C NC +
Sbjct: 71 SVEE--GPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF 120
>sp|Q1XHV8|RPA12_PANTR DNA-directed RNA polymerase I subunit RPA12 OS=Pan
troglodytes GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 82 bits (202), Expect = 2e-015
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = -2
Query: 580 SIHQSDFMFCEICGTMLSF-NKKSYVHCPLCKSRKKIKDFDGMEIKYTVSEEQIRRELGL 404
S QSD FC CG++L + V C C ++DF+G +K +V Q+ + +
Sbjct: 11 SSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPM 70
Query: 403 SSIEISGERTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGY 248
S E G + + RCP+C ++G+ YHT+Q RSADEGQT+FY C NC +
Sbjct: 71 SVEE--GPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF 120
>sp|O94703|RPA12_SCHPO DNA-directed RNA polymerase I subunit RPA12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa12 PE=2
SV=1
Length = 119
Score = 79 bits (192), Expect = 3e-014
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = -2
Query: 559 MFCEICGTMLSFNKKSYVHCPLCKSRKKIKDFDGM--EIKYTVSEEQIRRELGLSSIEIS 386
+FC CG +L + C C+S + F + E K + S +L S +++
Sbjct: 8 IFCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVE 67
Query: 385 GERTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGYNFTDN 233
++ + +CPKC N + +HT Q RSADEG T+FY CP C Y F+ N
Sbjct: 68 SQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTN 118
>sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus
GN=ZNRD1 PE=2 SV=1
Length = 123
Score = 78 bits (191), Expect = 4e-014
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = -2
Query: 580 SIHQSDFMFCEICGTMLSF-NKKSYVHCPLCKSRKKIKDFDGMEIKYTVSEEQIRRELGL 404
S QSD FC CG++L + V C C ++DF+G +K +V ++ + L
Sbjct: 8 SSFQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPL 67
Query: 403 SSIEISGERTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGY 248
S E G + + RC +C ++G+ YHT+Q RSADEGQT+FY C NC +
Sbjct: 68 SMEE--GPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKF 117
>sp|Q791N7|RPA12_MOUSE DNA-directed RNA polymerase I subunit RPA12 OS=Mus
musculus GN=Znrd1 PE=2 SV=1
Length = 123
Score = 76 bits (185), Expect = 2e-013
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Frame = -2
Query: 571 QSDFMFCEICGTMLSF-NKKSYVHCPLCKSRKKIKDFDGMEIKYTVSEEQIRRELGLSSI 395
QSD FC CG++L + V C C ++D +G +K +V ++ + LS
Sbjct: 11 QSDLDFCPDCGSVLPLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNKLGATIPLSVD 70
Query: 394 EISGERTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGY 248
E G + + RCP+C ++G+ YHT+Q RSADEGQT+FY C NC +
Sbjct: 71 E--GPELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINCKF 117
>sp|Q6MFY5|RPA12_RAT DNA-directed RNA polymerase I subunit RPA12 OS=Rattus
norvegicus GN=Znrd1 PE=2 SV=1
Length = 123
Score = 75 bits (184), Expect = 3e-013
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Frame = -2
Query: 571 QSDFMFCEICGTMLSF-NKKSYVHCPLCKSRKKIKDFDGMEIKYTVSEEQIRRELGLSSI 395
QSD FC CG++L + V CP C ++DF G +K +V ++ + +S
Sbjct: 11 QSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVD 70
Query: 394 EISGERTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGY 248
E G ++ + RC +C ++G+ Y+T+Q RSADEGQT+FY C NC +
Sbjct: 71 E--GPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKF 117
>sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPA12 PE=1
SV=1
Length = 125
Score = 65 bits (157), Expect = 4e-010
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Frame = -2
Query: 514 SYVHCPLCKSRKKIKDFDGMEIKYTVSEEQIRRELGL--SSIEISGERTRSMD---YNVR 350
S V C CK+ F +++ T +++ L S ++ S ++ D +
Sbjct: 26 SNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKSVVKTSLKKNELKDGATIKEK 85
Query: 349 CPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGYNFTDN 233
CP+C N+ + YHT Q RSADEG T+FY C +CGY F N
Sbjct: 86 CPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTN 124
>sp|Q56254|RPOM_THECE DNA-directed RNA polymerase subunit M OS=Thermococcus
celer GN=rpoM PE=1 SV=1
Length = 110
Score = 56 bits (133), Expect = 2e-007
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Frame = -2
Query: 556 FCEICGTMLSFNKKSYVHCPLCKSRKKIKDFD-GMEIKYTVSEEQIRRELGLSSIEISGE 380
FC CG ++ ++K V +C+S + FD + + TV +++++ + + I +
Sbjct: 3 FCPKCGNLMLPDRKRKVW--VCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVVIEQD 60
Query: 379 RTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGYNF 242
+ CPKC N Y+ QTR+ DE T+FY C CG+ +
Sbjct: 61 LKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 106
>sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1
/ JCM 10045 / NBRC 100440) GN=rpoM PE=3 SV=1
Length = 108
Score = 53 bits (125), Expect = 2e-006
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Frame = -2
Query: 553 CEICGTMLSFNKKSYVHCPLCKSRKKIKDFDGMEIKYTVSEEQIRRELGLSSIEISGERT 374
C C ++ K + C +C ++ E +Y E ++ ++ IE G T
Sbjct: 5 CPKCNNLM-LPKDGKLKCAVCGYEEETTAEGSKEYEY--KEHLENKKEKITVIESEGLET 61
Query: 373 RSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGYNFTD 236
+ CPKC + Y+ QQTR ADE +T FY C CG+ + +
Sbjct: 62 LPTT-RIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106
>sp|O27369|RPOM_METTH DNA-directed RNA polymerase subunit M
OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053
/ JCM 10044 / NBRC 100330 / Delta H) GN=rpoM PE=3 SV=2
Length = 104
Score = 52 bits (123), Expect = 3e-006
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Frame = -2
Query: 463 DGMEIKYTVSEEQIRRELGLSSIEISGERTRSM-DYNVRCPKCSNKGVYYHTQQTRSADE 287
D ++ KY VSEE +E +I +G+ ++ V CPKC N ++ QQTR ADE
Sbjct: 30 DKLKDKYRVSEEVEAKE----TIIFTGDDVNTLPTTRVECPKCGNMEAFWWLQQTRRADE 85
Query: 286 GQTMFYNCPNCGYNFTD 236
+T F+ C C + + +
Sbjct: 86 SETRFFRCTRCKHTWRE 102
>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1
SV=1
Length = 110
Score = 50 bits (119), Expect = 9e-006
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Frame = -2
Query: 556 FCEICGTMLSFNK-KSYVHCPLCKSRKKIKDFDGMEI--KYTVSEEQIRRELGLSSIEIS 386
FC C ML S V+ C+S +G+EI + + +++ LG +
Sbjct: 4 FCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWDNVD 63
Query: 385 GERTRSMDYNVRCPKCSNKGVYYHTQQTRSADEGQTMFYNCPNCGYNFTDN 233
+T+ +Y+ C + Y+ Q RSADE T FY C NCG+ + +N
Sbjct: 64 QTKTQCPNYDT----CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
Database: Uniprot/SwissProt
Posted date: Thu Sep 27 17:53:50 2012
Number of letters in database: 190,795,139
Number of sequences in database: 537,505
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,654,489,588
Number of Sequences: 537505
Number of Extensions: 79654489588
Number of Successful Extensions: 460231956
Number of sequences better than 0.0: 0
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