Chrysanthenum transcriptome database

GenBank blast output of UN44568


BLASTX 7.6.2

Query= UN44568 /QuerySize=399
        (398 letters)

Database: GenBank nr;
          20,571,509 sequences; 7,061,663,739 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide re...     71   4e-011
gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide re...     70   7e-011
gi|224126121|ref|XP_002329666.1| predicted protein [Populus tric...     58   4e-007
gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing...     57   8e-007

>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing
        protein At2g18940-like [Glycine max]

          Length = 829

 Score =  71 bits (173), Expect = 4e-011
 Identities = 44/99 (44%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = -3

Query: 339 MDNTFLPNRPAFPLQLTKPTKQPRPSFNPTTLPPQ-PPSPPQSFPIDPLLQHLIHLSSPQ 163
           M+ T  PNRP  P    KPT+QP   F PT LPPQ PP PP SF +D LLQHL HLSS  
Sbjct:   1 MEGTLFPNRPVLPAPSHKPTQQPL-KFKPTFLPPQSPPPPPPSFQLDSLLQHLQHLSSVP 59

Query: 162 KTTTHFAKTNNTHFK-KHFPKKTHVRKSVKTSSILTLED 49
            TT        +H   K F    H +     S  +  ED
Sbjct:  60 ITTHTLTLVPPSHDNTKDFNNSVHSKHPTLGSGSIIDED 98

>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing
        protein At2g18940-like [Glycine max]

          Length = 830

 Score =  70 bits (171), Expect = 7e-011
 Identities = 38/64 (59%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = -3

Query: 339 MDNTFLPNRPAFPLQLTKPTKQPRPSFNPTTLPPQ--PPSPPQSFPIDPLLQHLIHLSSP 166
           M+ T  PNRP  P+   KPT QP   F PT LPPQ  PPSPP SF +D LLQHL HLSS 
Sbjct:   1 MEGTLFPNRPVLPVPSHKPT-QPPLKFKPTFLPPQSPPPSPPPSFQLDSLLQHLQHLSSV 59

Query: 165 QKTT 154
             TT
Sbjct:  60 PITT 63

>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]

          Length = 821

 Score =  58 bits (139), Expect = 4e-007
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
 Frame = -3

Query: 339 MDNTFLPNRPAFPLQLTKP---TKQPRPSFNPTTLPPQPPSPPQSFPIDPLLQHLIHLSS 169
           M+++   N+P +P+ + +P      P   F+  TLPP PPSP  +F  D LLQHL+HLSS
Sbjct:   1 MESSLFANKPVYPIPINRPPPLPNNPPLKFSSATLPP-PPSPQSTFHFDSLLQHLLHLSS 59

Query: 168 PQKTTTHFAKTNNTHF 121
           P        K N T F
Sbjct:  60 PPN-----HKLNKTQF 70

>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein
        [Arabidopsis thaliana]

          Length = 822

 Score =  57 bits (136), Expect = 8e-007
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 13/66 (19%)
 Frame = -3

Query: 339 MDNTFLPNRPAFPLQLTKPTKQPRPS--------FNPTTLPPQPPSPPQSFPIDPLLQHL 184
           MD    P++P +P+Q    +K+P PS        F+  TL   PPSPP SFP+D LL HL
Sbjct:   1 MDGALFPHKPPYPIQ----SKRPPPSQSSNQSIKFSSATLHLPPPSPP-SFPLDSLLHHL 55

Query: 183 IHLSSP 166
           +HLSSP
Sbjct:  56 VHLSSP 61

  Database: GenBank nr
    Posted date:  Thu Sep 27 19:07:00 2012
  Number of letters in database: 7,061,663,739
  Number of sequences in database:  20,571,509

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 917,521,422,910
Number of Sequences: 20571509
Number of Extensions: 917521422910
Number of Successful Extensions: 181170017
Number of sequences better than 0.0: 0