Chrysanthenum transcriptome database

Arabidopsis blast output of UN23806


BLASTX 7.6.2

Query= UN23806 /QuerySize=466
        (465 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT5G66540.1 | Symbols:  | FUNCTIONS IN: molecular...    162   1e-040

>TAIR9_protein||AT5G66540.1 | Symbols:  | FUNCTIONS IN: molecular_function
        unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus,
        nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth
        stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar
        ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10
        protein (InterPro:IPR007151); Has 76240 Blast hits to 38667 proteins in
        1479 species: Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi -
        9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source:
        NCBI BLink). | chr5:26556653-26559310 REVERSE

          Length = 525

 Score =  162 bits (409), Expect = 1e-040
 Identities = 81/139 (58%), Positives = 104/139 (74%), Gaps = 5/139 (3%)
 Frame = -2

Query: 404 EDMESDDETK---KGN--LSTHEKQMMEQRAKIEQVEKENLEAKSWTMQGEVTATKRPKN 240
           +D+  D+E +   KGN  LSTHE+  ++ ++KIEQ+EK NL+ K WTMQGE+TA KRP N
Sbjct: 261 KDLSEDEEAEIENKGNEKLSTHERARLKLQSKIEQMEKANLDPKHWTMQGEITAAKRPMN 320

Query: 239 SALEADLDWERNANPPPVITEEFSLSIEELIKKRITEGQFDDAERASSLPSKAPREMKEM 60
           SALE DLD+E NA P PVITEE + S+E+LIK RI E +FDD +RA  LP+K  RE KE+
Sbjct: 321 SALEVDLDFEHNARPAPVITEEVTASLEDLIKSRIIEARFDDVQRAPRLPTKGKREAKEL 380

Query:  59 DENQSKKGLGEIYADEYAQ 3
           DE++SKKGL E+Y  EY Q
Sbjct: 381 DESKSKKGLAEVYEAEYFQ 399

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,362,786,392
Number of Sequences: 33410
Number of Extensions: 5362786392
Number of Successful Extensions: 210386093
Number of sequences better than 0.0: 0