GenBank blast output of UN03187
BLASTX 7.6.2
Query= UN03187 /QuerySize=1195
(1194 letters)
Database: GenBank nr;
20,571,509 sequences; 7,061,663,739 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|224137360|ref|XP_002322538.1| predicted protein [Populus tric... 470 5e-130
gi|255556707|ref|XP_002519387.1| tfiif-alpha, putative [Ricinus ... 469 6e-130
gi|224089605|ref|XP_002308775.1| predicted protein [Populus tric... 466 7e-129
gi|297741818|emb|CBI33123.3| unnamed protein product [Vitis vini... 463 4e-128
gi|359495563|ref|XP_002262798.2| PREDICTED: transcription initia... 453 3e-125
gi|356532499|ref|XP_003534809.1| PREDICTED: transcription initia... 446 7e-123
gi|356555722|ref|XP_003546179.1| PREDICTED: transcription initia... 444 2e-122
gi|357447861|ref|XP_003594206.1| Transcription initiation factor... 424 2e-116
gi|297809559|ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis... 423 5e-116
gi|75207777|sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription i... 421 2e-115
>gi|224137360|ref|XP_002322538.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 470 bits (1207), Expect = 5e-130
Identities = 237/323 (73%), Positives = 255/323 (78%), Gaps = 4/323 (1%)
Frame = -1
Query: 1125 MSFDLMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYN 946
MSFDL+LK C CGS +LYGSNCKHMTLC+ CGK MAE + KC DCGTTVSRLIREYN
Sbjct: 1 MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYN 60
Query: 945 VRASSPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLL 766
VRAS+ S+KNYFIGRFVTGLPSFSKKKN NKWSL KEG+ GRQITD LREKFKNKPWLL
Sbjct: 61 VRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWLL 120
Query: 765 EDETGQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSW--YNFNKVAQYKQLTLEEAEE 592
EDETGQ Q+QG LEG+Q+ATYYLLM+ GKEFVAIPAGSW YNFNKVA YKQLTLEEAEE
Sbjct: 121 EDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAEE 180
Query: 591 KIKNRRKTADGYERWMMKAANNGAAAFGEVERSDDKESVGAGGR-GRKKNNADDDEANVS 415
K+KNRRKTADGYERWMMKAANNGAAAFGEVE+ DDKE V AGGR GR+K + DDDE NVS
Sbjct: 181 KMKNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVS 240
Query: 414 DRGXXXXXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDD 235
DRG + RKSRLGLNK WEHEEIFTDDD
Sbjct: 241 DRGEEDEEEEAGRKSRLGLNK-QGGGDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 299
Query: 234 EAVANDPDEREDLGPEIPAPPEI 166
EAVA DP+EREDL PE+PAPPEI
Sbjct: 300 EAVAIDPEEREDLAPEVPAPPEI 322
>gi|255556707|ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis]
Length = 533
Score = 469 bits (1206), Expect = 6e-130
Identities = 232/319 (72%), Positives = 252/319 (78%), Gaps = 1/319 (0%)
Frame = -1
Query: 1122 SFDLMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYNV 943
+ DLMLK C CGS +LYGSNCKHMTLC+ CGK MAE KC DCG TVSRLIREYNV
Sbjct: 3 TMDLMLKGSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNV 62
Query: 942 RASSPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLLE 763
RASS S+KNYFIGRFVTGLPSFSKKKN NKWSLQKEGLQGRQ+TD LREK+KN+PWLLE
Sbjct: 63 RASSSSDKNYFIGRFVTGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLE 122
Query: 762 DETGQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKIK 583
DETGQFQ+QG LEG+Q+ATYYLL+LQGKEFVAIPA SWYNFNKVAQYKQLTLEEAEEK++
Sbjct: 123 DETGQFQYQGHLEGSQSATYYLLILQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMR 182
Query: 582 NRRKTADGYERWMMKAANNGAAAFGEVERSDDKESVGAGGRGRKKNNADDDEANVSDRGX 403
NRRKTADGYERWMMKAANNG AAFGEVE+ DDK+S A GRGRKK DD+E NVSDRG
Sbjct: 183 NRRKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDRGD 242
Query: 402 XXXXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVA 223
+ARK+RLGLNK WEHEEIFTDDDEAV
Sbjct: 243 EDEEEEAARKNRLGLNK-RGGDDDEEGPRGGDHDIDDDDIEKGDDWEHEEIFTDDDEAVG 301
Query: 222 NDPDEREDLGPEIPAPPEI 166
ND +EREDL PE+PAPPEI
Sbjct: 302 NDREEREDLAPEVPAPPEI 320
>gi|224089605|ref|XP_002308775.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 466 bits (1197), Expect = 7e-129
Identities = 234/323 (72%), Positives = 253/323 (78%), Gaps = 4/323 (1%)
Frame = -1
Query: 1125 MSFDLMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYN 946
MSFDL L+ C CGS +LYGSNCKHMTLC+ CGK MAE + KC DCG V+RLIREYN
Sbjct: 1 MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60
Query: 945 VRASSPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLL 766
VRAS+ SEKNYFIGRFVTGLP FSKKKN NKWSL KEG+ GRQITDTLREKFKNKPWLL
Sbjct: 61 VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120
Query: 765 EDETGQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSW--YNFNKVAQYKQLTLEEAEE 592
EDETGQFQ+QG LEG+Q+ATYYLLM+ GKEFVAIPAGSW YNFNKVA YKQLTLEEAEE
Sbjct: 121 EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEE 180
Query: 591 KIKNRRKTADGYERWMMKAANNGAAAFGEVERSDDKESVGAGGR-GRKKNNADDDEANVS 415
K+KNRRKTADGYERWMMKAA+NGAAAFGEVE+ DDK+ V AGGR GRKK N DDDE NVS
Sbjct: 181 KMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVS 240
Query: 414 DRGXXXXXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDD 235
D+G + RKSRLGLNK WEHEEIFTDDD
Sbjct: 241 DKGEEDEEEEAGRKSRLGLNK-GGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 299
Query: 234 EAVANDPDEREDLGPEIPAPPEI 166
EAVA DP+EREDL PE+PAPPEI
Sbjct: 300 EAVAIDPEEREDLAPEVPAPPEI 322
>gi|297741818|emb|CBI33123.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 463 bits (1190), Expect = 4e-128
Identities = 226/322 (70%), Positives = 251/322 (77%), Gaps = 3/322 (0%)
Frame = -1
Query: 1125 MSFDLMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYN 946
MSFDLMLK C CGS +LYGSNCKHMTLC+ CGK MAE KC DCGT V+RLIREYN
Sbjct: 1 MSFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYN 60
Query: 945 VRASSPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLL 766
VR +S +KNYFIGRFVTGLP FSKKKN NKWSL KEGLQGRQ++D LREK+KNKPWLL
Sbjct: 61 VRTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLL 120
Query: 765 EDETGQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKI 586
EDETGQ+Q+ G LEG+Q+ATYYLLM+QGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK+
Sbjct: 121 EDETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 585 KNRRKTADGYERWMMKAANNGAAAFGEVERSDDKESVGA--GGRGRKKNNADDDEANVSD 412
KNRR+TADGY+RWMMKAANNG AAFGEVE+ DDKE+ GA GGRGRKK D++E NVSD
Sbjct: 181 KNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSD 240
Query: 411 RGXXXXXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDE 232
+ + RK+RLGLNK WEHEEIFTDDDE
Sbjct: 241 KAEEDEEEEAERKNRLGLNK-RSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDE 299
Query: 231 AVANDPDEREDLGPEIPAPPEI 166
AV NDP+EREDL PE+PAPPEI
Sbjct: 300 AVGNDPEEREDLAPEVPAPPEI 321
>gi|359495563|ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF
subunit alpha-like [Vitis vinifera]
Length = 534
Score = 453 bits (1165), Expect = 3e-125
Identities = 221/317 (69%), Positives = 246/317 (77%), Gaps = 3/317 (0%)
Frame = -1
Query: 1110 MLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYNVRASS 931
MLK C CGS +LYGSNCKHMTLC+ CGK MAE KC DCGT V+RLIREYNVR +S
Sbjct: 1 MLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNS 60
Query: 930 PSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLLEDETG 751
+KNYFIGRFVTGLP FSKKKN NKWSL KEGLQGRQ++D LREK+KNKPWLLEDETG
Sbjct: 61 SGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETG 120
Query: 750 QFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKIKNRRK 571
Q+Q+ G LEG+Q+ATYYLLM+QGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK+KNRR+
Sbjct: 121 QYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRR 180
Query: 570 TADGYERWMMKAANNGAAAFGEVERSDDKESVGA--GGRGRKKNNADDDEANVSDRGXXX 397
TADGY+RWMMKAANNG AAFGEVE+ DDKE+ GA GGRGRKK D++E NVSD+
Sbjct: 181 TADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEED 240
Query: 396 XXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVAND 217
+ RK+RLGLNK WEHEEIFTDDDEAV ND
Sbjct: 241 EEEEAERKNRLGLNK-RSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGND 299
Query: 216 PDEREDLGPEIPAPPEI 166
P+EREDL PE+PAPPEI
Sbjct: 300 PEEREDLAPEVPAPPEI 316
>gi|356532499|ref|XP_003534809.1| PREDICTED: transcription initiation factor IIF
subunit alpha-like [Glycine max]
Length = 541
Score = 446 bits (1145), Expect = 7e-123
Identities = 221/320 (69%), Positives = 247/320 (77%), Gaps = 2/320 (0%)
Frame = -1
Query: 1125 MSFDLMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYN 946
MS DL LK+ C CGS +LYGSNCKHMTLC+ CGK MA ++ KC DCG T++RLIREYN
Sbjct: 1 MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLGCGKTMAAKRAKCVDCGATLTRLIREYN 60
Query: 945 VRASSPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLL 766
VRASSP++KNYFIGRF+ GLP FSKKK+ NKWSLQK+GL GRQITDTLREK+KNKPWLL
Sbjct: 61 VRASSPNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLL 120
Query: 765 EDETGQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKI 586
EDETGQ QFQG LEG+Q+ATYYLLM + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK+
Sbjct: 121 EDETGQSQFQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 585 KNRRKTADGYERWMMKAANNGAAAFGEVERSDDKESVGAGGRGRKKNNADDDEANVSDRG 406
KNR+KTADGY+RWMMKAANNG AAFGE + DD ES GGR KK + +DDE +VSD+G
Sbjct: 181 KNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDNESNTGGGRSHKKTD-EDDEGHVSDKG 239
Query: 405 XXXXXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 226
S RKSRLGLNK WEHEEIFTDDDEAV
Sbjct: 240 EEDEEEESERKSRLGLNK-RAGEDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAV 298
Query: 225 ANDPDEREDLGPEIPAPPEI 166
NDP+EREDL PE+PAPPEI
Sbjct: 299 GNDPEEREDLAPEVPAPPEI 318
>gi|356555722|ref|XP_003546179.1| PREDICTED: transcription initiation factor IIF
subunit alpha-like [Glycine max]
Length = 539
Score = 444 bits (1141), Expect = 2e-122
Identities = 222/320 (69%), Positives = 247/320 (77%), Gaps = 2/320 (0%)
Frame = -1
Query: 1125 MSFDLMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYN 946
MS DL LK+ C CGS +LYGSNCKHMTLC+ CGK MAE++ KC DCG T++RLIREYN
Sbjct: 1 MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAEKRAKCFDCGATLTRLIREYN 60
Query: 945 VRASSPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLL 766
VRASS ++KNYFIGRF+ GLP FSKKK+ NKWSLQK+GL GRQITDTLREK+KNKPWLL
Sbjct: 61 VRASSTNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLL 120
Query: 765 EDETGQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKI 586
EDETGQ QFQG LEG+Q+ATYYLLM + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK+
Sbjct: 121 EDETGQSQFQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 585 KNRRKTADGYERWMMKAANNGAAAFGEVERSDDKESVGAGGRGRKKNNADDDEANVSDRG 406
KNR+KTADGY+RWMMKAANNG AAFGE + DDKES G R RKK +DDE +VSD+G
Sbjct: 181 KNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDKESNTGGVRIRKK-TGEDDEGHVSDKG 239
Query: 405 XXXXXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 226
S RKSRLGLNK WEHEEIFTDDDEAV
Sbjct: 240 EEDEEEESERKSRLGLNK-RAGDDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAV 298
Query: 225 ANDPDEREDLGPEIPAPPEI 166
NDP+EREDL PE+PAPPEI
Sbjct: 299 GNDPEEREDLAPEVPAPPEI 318
>gi|357447861|ref|XP_003594206.1| Transcription initiation factor IIF subunit
alpha [Medicago truncatula]
Length = 536
Score = 424 bits (1090), Expect = 2e-116
Identities = 208/317 (65%), Positives = 234/317 (73%), Gaps = 2/317 (0%)
Frame = -1
Query: 1116 DLMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYNVRA 937
DL LK+ C CG LYGSNCKH+T+C CGK MAE + KC CG ++RLIREYNVRA
Sbjct: 2 DLQLKSSCSGCGETTGLYGSNCKHLTICAPCGKTMAENRSKCSTCGALLTRLIREYNVRA 61
Query: 936 SSPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLLEDE 757
SS ++KNYFIGRF+TGLP FSKKK+ NKWSLQK+GL+GRQ+TD REK+KN+PWLLEDE
Sbjct: 62 SSANDKNYFIGRFMTGLPDFSKKKSAENKWSLQKDGLKGRQVTDATREKYKNRPWLLEDE 121
Query: 756 TGQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKIKNR 577
TGQ QFQG LEG+Q+ATYYLLM + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK+KNR
Sbjct: 122 TGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR 181
Query: 576 RKTADGYERWMMKAANNGAAAFGEVERSDDKESVGAGGRGRKKNNADDDEANVSDRGXXX 397
+KTADGY+RWMMKAANNG AAFGE + DDKES GGRGRKK D+DE SD+G
Sbjct: 182 KKTADGYQRWMMKAANNGPAAFGEHGKLDDKESNAGGGRGRKKTGDDEDEGPSSDKGEED 241
Query: 396 XXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVAND 217
RK R NK WEHEEIFTDDDEAV ND
Sbjct: 242 EDEEVDRKKR--PNKKNTFDDDEEGPRGGDHDEDDYDVEKGDDWEHEEIFTDDDEAVGND 299
Query: 216 PDEREDLGPEIPAPPEI 166
P+EREDL PE+PAPPEI
Sbjct: 300 PEEREDLAPEVPAPPEI 316
>gi|297809559|ref|XP_002872663.1| mutant TFIIF-alpha [Arabidopsis lyrata subsp.
lyrata]
Length = 619
Score = 423 bits (1086), Expect = 5e-116
Identities = 216/321 (67%), Positives = 247/321 (76%), Gaps = 10/321 (3%)
Frame = -1
Query: 1113 LMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYNVRAS 934
L LK C CGS ++LYGS+C+HMTLC+KCG+ MAE K KC DCGT ++RLIREYNVRA+
Sbjct: 5 LQLKPACMGCGSQSDLYGSSCRHMTLCLKCGRTMAENKAKCLDCGTVLTRLIREYNVRAA 64
Query: 933 SPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLLEDET 754
+P++KNYFIGRFVTGLP+F KK NKWSL+K+ QGRQ TD REK KNKPW+LEDET
Sbjct: 65 APTDKNYFIGRFVTGLPNF--KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDET 122
Query: 753 GQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKIKNRR 574
GQFQ+QG LEG+Q+ATYYLL++Q KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK+KNRR
Sbjct: 123 GQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRR 182
Query: 573 KTADGYERWMMKAANNGAAAFGEVERSDDKE---SVGAGGRGRKKNN-ADDDEANVSDRG 406
KTADGY+RWMMKAANNG A FGEV+ +DKE S G GGRGRKK++ D+DE NVSDRG
Sbjct: 183 KTADGYQRWMMKAANNGPALFGEVD--NDKESGGSSGGGGRGRKKSSGGDEDEGNVSDRG 240
Query: 405 XXXXXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 226
++RKSRLGLNK WEHEEIFTDDDEAV
Sbjct: 241 EEDEEEEASRKSRLGLNK-KSNDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV 299
Query: 225 ANDPDERED-LGPEIPAPPEI 166
NDP+ERED L PEIPAPPEI
Sbjct: 300 GNDPEEREDLLAPEIPAPPEI 320
>gi|75207777|sp|Q9SU25.1|T2FA_ARATH RecName: Full=Transcription initiation
factor IIF subunit alpha; Short=TFIIF-alpha; AltName: Full=General
transcription factor IIF subunit 1; AltName: Full=Transcription
initiation factor RAP74 homolog; Short=AtRAP74
Length = 649
Score = 421 bits (1081), Expect = 2e-115
Identities = 211/321 (65%), Positives = 246/321 (76%), Gaps = 9/321 (2%)
Frame = -1
Query: 1113 LMLKACCDLCGSPNELYGSNCKHMTLCVKCGKLMAERKDKCRDCGTTVSRLIREYNVRAS 934
L L C CGS ++LYGS+C+HMTLC+KCG+ MA+ K KC +CGT V+RLIREYNVRA+
Sbjct: 5 LQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYNVRAA 64
Query: 933 SPSEKNYFIGRFVTGLPSFSKKKNDSNKWSLQKEGLQGRQITDTLREKFKNKPWLLEDET 754
+P++KNYFIGRFVTGLP+F KK NKWSL+K+ QGRQ TD REK KNKPW+LEDET
Sbjct: 65 APTDKNYFIGRFVTGLPNF--KKGSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDET 122
Query: 753 GQFQFQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKIKNRR 574
GQFQ+QG LEG+Q+ATYYLL++Q KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK+KNRR
Sbjct: 123 GQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRR 182
Query: 573 KTADGYERWMMKAANNGAAAFGEVERSDDKES---VGAGGRGRKKNN-ADDDEANVSDRG 406
KTADGY+RWMMKAANNG A FGEV+ ++KES G GGRGRKK++ D++E NVSDRG
Sbjct: 183 KTADGYQRWMMKAANNGPALFGEVD--NEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRG 240
Query: 405 XXXXXXXSARKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 226
++RKSRLGLN+ WEHEEIFTDDDEAV
Sbjct: 241 DEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV 300
Query: 225 ANDPDERED-LGPEIPAPPEI 166
NDP+ERED L PEIPAPPEI
Sbjct: 301 GNDPEEREDLLAPEIPAPPEI 321
Database: GenBank nr
Posted date: Thu Sep 27 19:07:00 2012
Number of letters in database: 7,061,663,739
Number of sequences in database: 20,571,509
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,502,395,045
Number of Sequences: 20571509
Number of Extensions: 333502395045
Number of Successful Extensions: 308925113
Number of sequences better than 0.0: 0
|