Simple sequence repeat (SSR)
>UN09326 CGGTATTGTTGGGACCAATGAGCGTCAGAAAATAATTTTGAAGCTCTCAAATACTGAAGTTGATGAGACGGACCATAAGATATCCAAGATGCTG ATGTGTCCATCCCAGTCAACCTCAGTTGGTTATGCCTGCACCTCTGCCAGCTCAGATAACGTGTAATGGTAATAACCAGAACACATATTAAGCA CCCCCGACAGCCCAGGCAGGGTGCAGGCATGGCCCACGCCCCTCAACGGGGCCGGGCTAATCCAAAACTTGCATCAGATTGTTGCTGCTGCTGA GATTGTGCATAGTGTTGATGAATCTGTTCATGAGGATGAATGAATGTCATCCCAGGCCGGTGACATGGATACTGCACATACAGTGTGGATGCTG AATGTGGGCCAGCATGGGTTGGACTAAACTGAGTCATCATAGCATCTGGAGGCCTGTAGCCTATTCCTGCAGGAGAAGATGGTGGGATCCATGG AGCAGGTAAATGTTGAGGAAGGACACGAGTTTGGTGTTCAGCAGGGGCTGGAGACCTGTGGGCTGGACCAAGCTGAGGAAATTCAGTGTTGTAG TTCACAACCGGCGTATACATTGGTTGTATGGCATACGAGCCTCCATTAAATCCGAACCCTGGATCAAATCTTTGTGCATATCTGTCATAGTTCC TGTCATAATCAGGATCATTCCGCTCAACTTCACGGTCACGAAATATGGCCACTCTACTATTACTCCTTGACCTAACAATTGGCTCCTTCTCTGT CCTACTTCTATCTGATCTACTGCTTCCGGCAGACGAATCAACCGATCTCCGGCCAATAATACTCACGTTAGGTACAGAAACGACTTCTTCTATC CTGGAACTCCCTAATGAACTATTATGCTGTAAAACTTCCTCCATCCTTGGCTCGCTCTCTTGTTTCCCACCACTAGAGCTGGAGCTAGAGCTAA ATATTCTTGCACGTGCTCGATTATATTCTTCTTTTCTCTCCTCAACACTTTTCAAGCTATTGCTCCTCTGTGAATTCGAATTTCCACCAACAAG TTGTGATCTTCTATTTGGTCTTTGCTTAATAGCAACTTTGACATTACTGTTTCCAGAATCATCACTTGGTAGTTTTATAGGGATATCAGCCAAA CGTATCAGAGGAAGACGGCATTCAGAAGTCTTGAAAACAATAATTCGGGAACCAGAACCGTCCGGGAGGTTATTGTCTAGTAAAACCGTGGATT GAAGAGAATAGTGTTGAGCCACACGATGTGCTGCTAAACGCAGATAAGAAGTAGGAAGCTGCTGAAACTCCATTTGTTGCTGTGATGGATCTCT AACAAACTTCTCTACATCCTGCTCAATCCGTAACACTGAAAGACGTTCACGGGGGTTTTGCAAAGCTTCGCGTAAAAACTGATCAACAGAAGAA TTGACAATCTCCTCTTCAGAAGAAGACAAATCAGGCGATGAGGAGCTCTTATTATTATTATTACTTTCGAGTTTCGATGATGATGATGACGTCA TCATCAGCCTGCTCATTGCTGCGTCCACGTCAGCAACCTCCCATGACTCCGGCGGACCACCGTCTTCTACTGATCCGGCCATGGCTGTCACTTG TGGTTATGGTGACGTCATCAGGGTGGAAATGAAGTTAGGGTTTGATCGGAGATTGGATTGGATATTTGGATTAGACT |
Primers for UN09326 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GCAAAGCTTCGCGTAAAAAC | 60.027 | 20 | AGTCATGGGAGGTTGCTGAC | 60.12 | 20 | 177 | 1376 | 1552 |
2 | GCAAAGCTTCGCGTAAAAAC | 60.027 | 20 | TGGCCGGATCAGTAGAAGAC | 60.218 | 20 | 210 | 1376 | 1585 |
3 | AGGAAGCTGCTGAAACTCCA | 60.134 | 20 | AGTCATGGGAGGTTGCTGAC | 60.12 | 20 | 278 | 1275 | 1552 |