Chrysanthenum transcriptome database

Simple sequence repeat (SSR)

>UN09059
TTTTTATACAATAAAGATTATCTATAGCAATTTTTGACATAAATTTTCTGATATTACATTTTGCTTAGTATTTTACAACAACAGCACCAATCTT
ATGATTGGTTTTAACACAATTTTACATGACCAAAAGGCAAGTTCTACAAATAGTAAGAGCAAAAATTACAATCTATAAACATAGAATTCTAGCA
AATGTGTTTGGTGCAGAGAAGTGGCATCAGAACAGAAGCTTTCCAAACTTTTCACGATCATCTCTCGATTGCATACCAACGTTGTATGGCTCGG
CGTCACTCAGCATCTTTACGACCTCTCTCATGCTCGGCCTGAGATTTGGGAGCTTCGTAGTACAAACCAAACCGATCATCAAAACCTTTTTCAT
GTCATCTACTAAATATTCCTCTGCCTCGTCCGAGACTAACTTGGGATCAAGAAGTTTAAGAATGTTTTCTTGGTCATTAAGGTTAGACAGAACC
CAATAGACTATGTCTTTTCCTTCCCCATACTCCTCGTCTATCGCGCTTTTTCCCGTCACCAATTCTAGTAACACTACCCCGAAACTATAAACGT
CGCTCTTTTCTGTCACTTTGAGAGTGTACGCCAATTCCGGTGCGATATAACCATGAGTGCCCACAAAACAGTTGGACTCTGACCCTAAACATTC
CTCGTTAGCGATCCTTGCCACCCCGAAATCAGCAATCTTTGGTTCAAAATCCTTATCGAGCAAAATGTTACTTGATTTGATATCTCGATGTAAT
ATAGCCGGAGTACAATCATGGTGCAAGTAAGCTATCCCTTTTGCAGCCCCGAATGCAATCTTGTATCTCTGAAACCAATCCAACTCGGGTAACC
CGTTCTTCACCACTCGACCCAATGCCTCGTACAGGTTCCCATTAACCATATGCTCAAAAACCAAAAAATTAGAACCCCCTTTCATCAAACAAGC
ATACAGTTTTAGTATATTCCGATGACGAATCTTTCCAAGAATCCCGATTTCCGCTGTCATGACTTGCACCTTATTCCCCTTCCAAATCTGCTTT
ACCGCAACCGTTAGCCCAGACTTTTTCAACTCGACCCGATACACTTTTCCAGTACCTCCAACCCCTATCAAGTTACCTTCATCCAAGTCACATA
GTTCATCTGCGTCGAACTCGATTTGATGGTAATTTTCAAGTTTCCACTTAGGATTTTTCGTACCTTTCTCGTCACCAAACCCATCTTTGGCTTC
GTTACGCCTCTTGAAGTTTCTATAGCTTGCATACATCAATCCTCCAATTAGTACCATCAAACTGAATAGTATGATACAATACATAACTAGTTTG
GTTTGGTTAATTTTGCGCCCGTGATTTTTACCGTCACAAATGTCCAACCCCAAATTCACTTTCCTCCCCGAATTTTCGTTAACACATAACCCTT
TGTTCCCTGCGAAAGCATCGTCTCCTCCCATGTTTAAAAGATCAGACGGAACTCTTCCCGACAAACGATTAACAGAAAGATCAATGGAGCTTAA
TCTTAAACGCCGAAGGTTGTCGGGAATACCACCTGTCAAAAGATTTCGCGACAAGTTAAGAGCATTAAGCGACGTAATATCCCCCAAGCTTTCG
GGAATTTTCCCTGTAAGAAAATTCCTTGCAAGATTTAAATCAACTAACTTGCCACATTCTCCCAATTTCGCGGGAATTGAACCAGAAAACAAAT
TGTTTTCGAGGTTCAAATACGATAACTGCTTGACATTCTGAACTTCAGTTGGGATTATACCCGAGAACTTGTTGTTGGATAGATCGAGCTTGCC
AAGCTGAGTTAACTTCCCGATTTCGGATGGAATCTCACCCGAAAAGCTGTTATCAGACAGGAGCAGCTGAGTTAAGCTGGTGGAGATACCAATC
ATTGGTGAAATTTGGCCACTGAAATTGTTGTCACTGAGATCGATCAAATCGACAGAAGGCAAACCCCACAACCCATCTGGTACTTTTCCGGATA
ACTGATTCTGATTGACTCTAAACCTCGTTAAAGACTTGCAGTTCGCGTATGTTTCGGGCACTTCACCTGAGAATTCATTTGACAGAGCTAACAA
CTTCTGCAATTTTTCTGACCCGCATAAGAACCTTGGAAACTGACCGCTGAACTTGTTCTCAGATATGTCGATTTCAACCAAAGGAGCAAACTTG
GCGAAATTCTCTGGGAATTTTCCTGTGAAATTGTTTCGGTAAATAGAGAACCCCTTGAGACGTTGCATGTCTCCGAAACCTGGAGGGAGTTCAC
CCGTGAAATGGTTCGTATTGCATTGAAAAACCGTCAAATTCTTCATGTTTCCTATTTCAGTAGGCAGCTCACCGTGCATTTGGTTATTCGAAAT
ATCAAATTCTTGCAAAAGGTTGAGCTGAGCAAACTCGGGTGGGATCACTCCTGTCAACTCGTTCCCAAAAAGCTCTATTTTCCACAGGTTTCGT
AAATTGGTGATCTCCACCGGGAACTCTCCAGATAATTTATTGCCAGCGAGATCAAGCGTTCCTAGTTCTTTCAGTCCAAATATCGATTTTGGAA
TTTGACCCGTTAATTGGCAGCCTCTTAAATAAAGAAAATTCAAATTCTTTAAATTTCCGGTACTATTTGGTATGCCACCCTCTTCAAAGTCGTT
ATCTCCGAGACTAAGCTGTGTTAAAGCCGTCAAACTTCCTATCCAAGCAGGGAACTTTCCGCCAAAATAGTTATCCGAAATATAAAGTACTTCC
AATTTGGTGAGCTTTGAAAGATCAGGTAATGACCCCGTGATGTTGTTTGAAGACACGTTTAAAACCCTGAGGTCAGTGCAGTTGACAATGGATG
CAGGCAGCTCCCCGGAGATAAAGTTGGAAGGGAGAATAAGAGACTGGAGGCTGTCTAGTGCGGAAATAGCAGGTGAGATCTTTCCCGTGAGGGA
GTTGTAGTTGAGTGAAATCTTTATGACTCGACCCGTTTGGTTGTGGCATAAAACCCCGTGAAACCCGCATGGGGAATCTGCTCCTTTCCATGAT
TCCAAGAAGTTGAAAGGATCTTCAAACTCTTTCTTCAGTTCAAGCAGCGCTTTGACCTCATCGCTCGGAGAAGCAGACCAACATAACCCTGGCA
ACGAGAATACGAAGATACAGAATACTAGTACAGCTGATTTCGACATTTTAGAAAATAGTGTCGTGTTGAAATCAAATGTCATTTGAAGAAAACA
TGAGTGTCCCTCTGCAGCTGGCAACTTCCATTATTGGGACGCCTTTCGTTCTTAATTTCTTCTGCTGATGAAGATAATATAGTAACTTTCCCGG
TTGATGAACTCTGCTTAGGTAATTGAGTGAGTGTGTACGTAGTAGTATATATATATATATATATATTTCAAGCGAGAACATGAGAGGGTGAAAT
CTTCTTAGGAAGAAGAGAAATCATTTGAAGAAAAGAAAACATGGGAGAATTGGATGGATTTGATTGTATTGGGATGGAAGAGATGAATGAACCC
AACGCTTTTCAATAAAAAAAATCTTTTCAAATGATGGATTATTATTGAGAGAG

Primers for UN09059 SSR

Primer pairForward primer (5'-3') Reverse primer (5'-3')Product
SequenceTemperatureSizeSequenceTemperature SizeSizeStartEnd
1CCGGTTGATGAACTCTGCTT 60.25520TCCATCCAATTCTCCCATGT 60.13520156 32873442
2TTTCCCGGTTGATGAACTCT 59.52620TCCATCCAATTCTCCCATGT 60.13520160 32833442
3CCGGTTGATGAACTCTGCTT 60.25520CCATCCAATTCTCCCATGTT 59.60520155 32873441