Simple sequence repeat (SSR)
>UN08143 TTTTTTTTAAACAATGAATTGAGATTCCATTTCCTCCAACAATTAACATAACCAAACCTACAATCATTTTGATCTCACTTATAAAACTTTTGTG TTAACGAAGGCCACACACACATACATGTATGTCTAATCTTACAACACGCACTAAGATCCCACGATAATACCCTCTAAAACAAATTTTATCATCA GTATCTTTCATTCAGTAACACTCATTTGCTAAATCTAACGGTAGTTACGGTATTTGGGGCTGTACATGCAGCTTTCAGCATATGCTACAAGGTT TTCTGGTTGCGGAAGACGACTTGCCAAACCAAGTTCATATACTTTAGCGGCAACCTTGGCAGCAATATGAGCAGAAATTTTGCGAATGTTGGTG AACGGTGGGTATATGAGCCCATTGTCAAAATGCTCCTGTGTTACCTGTTCAGCCAGAGCCTCGGAGGCTGCTAAAAGCATGTCATCATGAACAC GGATTGCACCAGAAATAATCAATCCCAAACCGAATCCAGGGAAGATGTATGCATTGTTGGACTGGCCTGATACGTAGACCTTTCCGTTATATTC AACAGGGGCAAATGGACTTCCACTGGCAAAGATAGCACGGCCCTCACTCCAGGTATAAGCTTGCTCAGCAGTACATTCGGATTGTGAAGTTGGG TTGGAAAGAGCGAGAATAATAGGTTTCTCATTAAAAGACGCCATAGCTTCAACGACATCTTTAGTAAAGGTCTGTCCAGCTCCTGATGATCCAA TCAACACCGTCGGCCTGATTGACTTGACAGCATCCAGGAATTTGTTAACAGGCTCATGATCATGGGCCCATGGCTTCTTGAAATGCTGAAGTGA ATTAAGGCGGGATTTAACGATCAAACCCTTCGAGTCCACAAGCCAAACCTTCTTGCGGGTCTCATCTAATGGTGCACCTGTCTGTTTTGATATC TCGAGAGCTATGAGTTCAGCAATGCCTGTGCCAGCCTCTCCAGCTCCAAGGAATAGGAATTTATGGTCTGCCAAGGATCCACCAACTAATTTTA GTGCCGAAATAAGCCCAGCAAGCACCACTGATGCAGTCCCCTGGATATCATCGTTAAAAACAAGATGGGTGGTGCTATACTTTTCAAGAAGATC GAATGCATTGTGGTTAGCAAAATCTTCAAACTGAATTAGGACCTTTTCCCCATAATTCTGCTTGACAGCAGACATGAACTCACTCATAAGTTCA GCATACTCCTGCCCACTCGCCCTCCTTTGCCTTAGACCAATGTAAAATTCATCATTCAACATTTCCTCATTGTTAGTCCCAACATCAATGGTTA CCGGCAAGCAAGCTGAAGGACGAATTCCTCCAAGAGCTGTGTAGAGAGAGAGCTTTCCCACAGGTATGCCCATTCCCTGGCAGCCAAGGTCTCC TAGGCCTAAAATTCGCTCACCATCAGTGACAACTATGACTTGAATTTTCTTCTGAGGCCAATTCTTTAAGATCTCAAGGATCTTCCCCTTGTCT TTCAAACTAATAAAGAGTCCCTGTGGGGTTTTGAAGATGCTCCCATATTTTTGGCAAGCTTCACCAACGGTTGGAGTATATACGATTGGGAGTA GCTCCTCAACGTTTTCAATTAGTAACTTGTAAAAAAGTCTCTCATTTCTCTCCTGAAGATCCATCATGGCCTGATATCGCTGAAGAGGTACTTG ATATTGGCGGATATTGTGCATCATCTTTTTTACCTGAAGATCGTGATTGACAACAACCGGAGGAAGAAGGCCACGTAAATAATGGGCATCTCGT TCTTTCTCAGTAAAGGCCAGACCCTTGTTGTGATGTGGGTCACGCAACAACGAATAGCCACTAGCAACAGAAACCGACCAAGGCGTAATGAAAT GATCCTCGGTAGCACTATCTTCACCATACACATCTTCAACGCCGCCACCAACAGCCGTCGTTTGCTTCTTATCATCCGCCTCGTTACTTCCAAC TTCTACGGCGACAGGAGCGTTTACGTCCTTAACAGCACTGTCCATTGAAACGCTCATGTTTCGCTGCTCGGGTTTGCCGTTACCGTTCACCATA GCTACCACTGTTGGCCGTTTAGCGGATGATAGGAGTCTCAGCGACTGCGATTGCGTCATCGAAACACCAGAAATCGAATTTTTCACGAACGAAG AGGTGTTTAACGACATCATGATGACGGCGTCAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGGGTTTGACCTGTGTAGATGCTTCTTCTT |
Primers for UN08143 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CCGTTTAGCGGATGATAGGA | 60.053 | 20 | AAGAAGAAGCATCTACACAGGTCA | 59.477 | 24 | 169 | 2083 | 2251 |
2 | ATAGCTACCACTGTTGGCCG | 60.154 | 20 | AAGAAGAAGCATCTACACAGGTCA | 59.477 | 24 | 186 | 2066 | 2251 |
3 | CAGCACTGTCCATTGAAACG | 60.301 | 20 | AAGAAGAAGCATCTACACAGGTCA | 59.477 | 24 | 245 | 2007 | 2251 |