Simple sequence repeat (SSR)
>UN06381 AATGCTTCCAAGAATTCCAAGCTCATTAGACCACCAACCTTAGCCCATTTGGATGTGCTAAATGCTTCTAGACCATTCTCACCATCAAGAATTG AGGAAAATGTTTTGAACCACTGAACTTTGCAAGTACTTTCTGTGGCTCCAGTTACATTAGCGGTAACTGTAACCTTACTTCCCTCCTTTAAATC ACCGATTATCTGCAGGTGTGTAACTTTCGGTGGAGCTCGCTTAACTATTGGAGACAGTGTTGAAACAGATTTCCCTTCCTGACCCTCAAGATTT ACAGGATGATATACAAAAGCCAATCGTGAACCAACATCTTCCTTAGACAAAGTATAGTCAGTCGTGCCAGTTAACACCGATACGAAGTCTCCTG TATCTCTGTTCTCACGCAACCATTCAAATTTGCTTGGTCCTTCTTTTCCTCCAAAGTAAACGCCTACCCCACTAATAGTTTTACCTTCTACGAC ATCTCCAATTATCTGCACATTATTAACTGATGGAGGAGCAGATTTTATATAATCTGTGATGGCATATTGAGGCTCTCCTTTGGTTCCTTCTTGT GTTACGGGAGTGTACATATAAACCAGACAAGATTCAACATCATCTAGAGTCAATTTATATTCCTCACTTTCTGCGCCATTAATCACCACTGGAC TACTATTCCATTTTCTCCTTAACCAGCTAGAAATGCCTTTTACTGGGGTCCCACCACACCAAGCAACCTCTGGGTGGCCTGTAATTACATTTCC CTCCACTAGTTCTCCACGAACATCAAGCTTCAGAACCTTTGGGCATCCGGTTCCCCGAGAAACAAGTGAAGATATAGCGAAAATAGGAGAATAT CTAGTATCTCCCAAAACAGGAGTACACTCCACTCTTAAAATCTTGCCCACATCATCACGTTTTGGCCAGTATACCTCAGCAGTAGCATCTGGAA TTGGAGTGAACTTTGAAAGACTTGAGCTTGATTAAAAAAATTCATGGCAGCGACACTTTGCAATCCATGTTCAAACCTGAAGTTGGTTTATGTG CGTGTGTGTGTTTGAAAAGAAATCTATTGTGTGTGTGTGTTTGAAAAGAGGTAAACAGATGGCAATTATAAAGGGCCATCTGTTTTGAGATGAA TCATAGAGAAGTAGGAGGTGTCGAGAAGCAGGAGGGGAGGTGGAGAGAAGCAGGAGATGGATAGCAGTTGTTTAAAGGGAATGGC |
Primers for UN06381 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | ATGTGCGTGTGTGTGTTTGA | 59.622 | 20 | CTCCTGCTTCTCGACACCTC | 60.135 | 20 | 133 | 1030 | 1162 |
2 | ATCATCACGTTTTGGCCAGT | 60.384 | 20 | CTCCTGCTTCTCGACACCTC | 60.135 | 20 | 266 | 897 | 1162 |
3 | CGACACTTTGCAATCCATGT | 59.572 | 20 | CTCCTGCTTCTCGACACCTC | 60.135 | 20 | 172 | 991 | 1162 |