Simple sequence repeat (SSR)
>UN06324 TAAACATACTTTGCTCAAAGATGTTGGCCAAAAAAGCCACCATTTGTAAATACTGGAATACAAATCAAAATCTATAGAAATACAAAGGTTAAAA AGAATAAGTTTTTAAACATATCCCTTTTTCCATAAACCAATAAACTCTGAAACTCATTATTTTCTAAGCATACACAACATCTTCGCCGTCTTTC TTTTCATACTCCTCACCTTCCACTTCATCGGCATACTCACCTTCATCATATTCATAACCTTCTTCACCATCCATTGGTTCATACTCGTACTCTC CCTCCCCGTCATCCTCATACGCTTCAAGCTCCTCATCAAGTGGCGCATCTTCATTAACCAAACCATCTTCTGTTTCTCCCTCATTAATATCATT ATTTACAGATGTGCCATCCGCTGGCTTATCTTCAACATTTTCAGGTTCAAAGTCGGCTGGCACAGAATTGTGTTCCTCTATTGCCTTCAGGTGG TGGTTGTCTTCAGTATTCACAGAAGAAATGTGATCTTCATTATTGGTCTTATTAGTATTGGTATCAGTATTATTATTAGTAATCCCTCTTTTTC GCTTCAAAATTTCACTAAGAGGCATTGGGCCTTTGAATGATGCATCTTCCTCAGTCCTTGCGTATTTTCTTTTTCCCAAAGATTGATCCTCGTT TGGCTGATGTTCAGTTCTACCACCAGTTTTTAGCTCGGACAGTCTTTTTGGTCCAGCAAACTTAGTATCGTTATCACTTATTCTGTCTCTAAAC CTGGAAAGATGCTTCCTTTCTGTGTCAATTTCCCTCTCTGTTCGCGGGTTATGTCCGTTAGGAGGAGAGGCTGATCTTCCCGGAATCTTTATTC GTCCTTGAAGTCGGCTACTGATAGCTTCACGGTCTTGACGGTAATCAGGCCGATGGTTATCTCTTCTTGGCATCCGGTCAGCATATTCGCGGCT GGCAACAGATCTTGACCCATGGTCAGAACCCGAACCATAAGCCCTTCGTTGGTTCGATATACGTTGGCGTAAATCCGACCTGTTATACTGATCA GGACTACTATTTCTATGATACGGTCTTCTTTCTTGACGGGTCTCATCCCATACATATTGACCGTCCCTTTCAGTATAATTGTCAAAATCTCGAT GCTCTCGTCCAATCCGATCAACATTATAATCTTGACTTCTTGATTTAGCAAAACTTTCTTCTTTTTCATGATGATATTCACCATCTTCAATTTC ATTATCCACAAGTACATCAAAACCAGGGGACGGTTCTCTTGAATATACATCCGCATCCTTTCCATTCAAAATTCTATCATTATGGAACCCACGG TTAAATTTGCTGGATGGTTGTTCATTCACGACAGGCGACGGAACCACACGAGCTGGTTTGTACCTAGGAGGCTCCTCTACACTTGTACTAAAAG ATGGCACCCTTTTATCAATAGCACCATTTCTAGCTGAAAAAGGTGTAGCTGAAAAAGGTGTCGGCCTTTGAGCGGTTGCTTGTTGTGGGAACTT TTGCTCTTGAATGGGTTTATTCTGAACAGGATGAGATACCTTAGGAGGTTCGGGAATAGGGTTTGTGGGACCCGTTTGTGTGGGTTTGTTAATG ATTGCATTTGGTGGGCCGTGTAAGAAAGGGCATAAGTGTCCTTTTAAACAGAAACCCTTCTGGAAGAAGATACATGCAACTCCTTGTTTGGGCA CAGCAGCATACGGAGCTGGATGTGCTGGTGGTACAGAAGGACCCATCGGAGTAGAACCATCGGCTCCCACTAATCCATCAAGAGGAGGATGACG GAAAGCGCATTTTGGATTTAAGCAACTCCCATTTAACCAATAATAGCAATCCCTGGGGTTAACCCGCGCAACATCACTATGGCGATACTCACAC TCACTTCCCTTTTTGCAAGTTAAAGGTGAAGCAAGAAAGTAAACACAATCAGTGTTTCTTTTCAAGGTTTCATCTTCTTCAGTTGTAATTGCCT GAGCTCCTGCTGCTGCTGCTGATGATGGCATACTTATTATTTTTTTTATAAAAGCTATTGGATCTTGATGATAATTGGATCTAGGGTATGTTAG AAAAAAGGGTTTTTTTTTAATAAAGATTGGATCTTTTTAGGG |
Primers for UN06324 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | AGCGCATTTTGGATTTAAGC | 59.349 | 20 | GATCCAATTATCATCAAGATCCA | 57.882 | 23 | 266 | 1790 | 2055 |
2 | AGCGCATTTTGGATTTAAGC | 59.349 | 20 | AGATCCAATTATCATCAAGATCCA | 58.846 | 24 | 267 | 1790 | 2056 |
3 | AGAGGAGGATGACGGAAAGC | 60.735 | 20 | CCAATTATCATCAAGATCCAATAGC | 60.077 | 25 | 280 | 1773 | 2052 |