Simple sequence repeat (SSR)
| >UN06239 TGTTTAAAAAGCTACATAAACCAAAATGGCATAAACATATAAGGTTACTTTGTTATTTCAAGATAAGGTGACACGGTATATGACCAGTCATTGA ATAACAGTTCAAGTATATAACAATAAAACATACTCGGTCCCCGTGGCGTGGTTGGTAGTCACCCGGGTCGGAAACCTGATAAGCCATTGCTGCA GTTCCAGACGCTACCGAAATATCCAAAATGACTGCTGTAGAGTACTCTCAAACCTTCGTGCCAAGATTAAAATCTATTTGACCTCTTAACTGAA GTGAGCCATCTTAAAGTAACCTGTCTGATCTTTTGAATTGAGTGACCCTCTGACTCGTTGCTTTAATTTGACCAATTTAGAGAACCTGATGTGG TCAACCATATGACATATGTGCGCCGTTCCTGTCTTGTTCAGGTTCGGAGCTTGATTATGTTCATTGACTGCAGCCAAAAGCACTGTGAAGCTGA AGCTGTACTTTTTGTTCGGCAGTCTTTCTCACGCGAATACATGCTCAGTATAACCGTTATTCCAGCTCTTAAAGCCGGTTGGATTTAAGCTCAA GTATCTTCAATTCTTTGCTGGTTACCTTTATAATGAAGTAGCACAGTCCTTCTTAGCATGAAATCTTTCGTCTACCCCCTTTGAGCCAAATTAA CAGTGGGATTTGAAGAAGCATCCAATTCCCAATTAAAGACCAACGCGCCTGTTTCAACATAGTCGTAATAGCAGTCAAGATCACGTGAATAAGA TCTTCGGCACAGATGATAGCGAATTTTCCAAGTCCCTGTATAACAGTATTGAGTCAGATGAAGCACCAACCGGTAAATGACTATCAGCAACAGG AATGCACAGAGAATCCTGAGCACGAACCACGTCCGTCACAAAATCTAGTACCTTTATCGCACCAAGCCACGCTGCAGAAATATAGACATTGGAT CATAGATGTAACAGACCCCCTTGGCAAATTCATTACCTAAAAGGCATCCTTTATCTCCTTTGATGATCCAGATCTTGCATATGTTCTATTTGTT CAATCTTCTCCGAAGCATGCACTTTTACAAACAAGTTAGATTGCATCTCTGTATAAGCTCCTGACTTTGTTGCTTTCGTATTTGCGGCGTTTTC CCGTATACAGCTCATCCTTTTTGTACTCTCCCGGATTCCGAGTTTGCCACCTTTCTTTAGCATCACGGCTAACCGTATTCAAATAAGTTTTTCA ATTAGACTCCAATAAATTCTTTGAAAGCATCAACTGCTCCGCCCGAGGTTGATTATACTCCTGAAGTGCATCCCACACATAACGTGGTGATATT AGAGCAGAAAGTGATTATTTACGATAGTGGTTGGTAGCCCAGCTTCAGAATCATTTAGGCCTGCTATGCACATTTCTGCAAGACTCCTTTTTCC GATAGCATATCTCAATGATGTTGGATGCCTCTCCGCGTGCCTGAGTTGCGAATATGTTGTTTAAGTATCAGTTTCGTCATCCAAATGTTTGCGA AGGCAGCTGCAACCGCCACCACGTTTTTGGAATATCAACATCATCATCATCATCAATCTTTTCAACTTTTGGCTCTTCAACCTTAACGCCGTGG TCTTGGGTGGTCCTTTGCCTCTAGCGCTTCTTCTACCGACGATCAATTCGCAGACTACAGTTACATGCATAGAAGAAACGTAGAAGATCTGAAG GACCGACATAAACTGTGAGCCACCAACGTCAGAGAAAACGAAGAGGAAGCGGTGATGATGATGATGATGATATTTGATGCCCTAACCATTATAT TTTAATCGGTTCTTGTTGATGATGATGGGTTAATAGATGAGATGAGTGTGAGTGTGATTTCTGGGTTTCTGGATCAAGAGAGAGAGGCGGTGAG TGTGATTTCCGAGTCCTGTACACGTT |
Primers for UN06239 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | TTTGCCTCTAGCGCTTCTTC | 59.867 | 20 | ATCACACTCACCGCCTCTCT | 59.866 | 20 | 275 | 1612 | 1886 |
| 2 | TAAACTGTGAGCCACCAACG | 59.758 | 20 | ATCACACTCACCGCCTCTCT | 59.866 | 20 | 186 | 1701 | 1886 |
| 3 | TTTGCCTCTAGCGCTTCTTC | 59.867 | 20 | CACTCACCGCCTCTCTCTCT | 59.732 | 20 | 271 | 1612 | 1882 |