Simple sequence repeat (SSR)
| >UN06238 TGTTTAAAAAGCTACATAAACCAAAATGGCATAAACATATAAGGTTACTTTGTTATTTCAAGATAAGGTGACACGGTATATGACCAGTCATTGA ATAACAGTTCAAGTATATAACAATAAAACATACTCGGTCCCCGTGGCGTGGTTGGTAGTCACCCGGGTCGGAAACCTGATAAGCCATTGCTGCA GTTCCAGACGCTACCGAAATATCCAAAATGACTGCTGTAGAGTACTCTCAAACCTTCGTGCCAAGATTAAAATCTATTTGACCTCTTAACTGAA GTGAGCCATCTTAAAGTAACCTGTCTGATCTTTTGAATTGAGTGACCCTCTGACTCGTTGCTTTAATTTGACCAATTTAGAGAACCTGATGTGG TCAACCATATGACATATGTGCGCCGTTCCTGTCTTGTTCAGGTTCGGAGCTTGATTATGTTCATTGACTGCAGCCAAAAGCACTGTGAAGCTGA AGCTGTACTTTTTGTTCGGCAGTCTTTCTCACGCGAATACATGCTCAGTATAACCGTTATTCCAGCTCTTAAAGCCGGTTGGATTTAAGCTCAA GTATCTTCAATTCTTTGCTGGTTACCTTTATAATGAAGTAGCACAGTCCTTCTTAGCATGAAATCTTTCGTCTACCCCCTTTGAGCCAAATTAA CAGTGGGATTTGAAGAAGCATCCAATTCCCAATTAAAGACCAACGCGCCTGTTTCAACTGCTGAGATATTAGATTCGTCGATACCATCACTTGT CATAGTCGTAATAGCAGTCAAGATCACGTGAATAAGATCTTCGGCACAGATGATAGCGAATTTTCCAAGTCCCTGTATAACAGTATTGAGTCAG ATGAAGCACCAACCGGTAAATGACTATCAGCAACAGGAATGCACAGAGAATCCTGAGCACGAACCACGTCCGTCACAAAATCTAGTACCTTTAT CGCACCAAGCCACGCTGCAGAAATATAGACATTGGATCATAGATGTAACAGACCCCCTTGGCAAATTCATTACCTAAAAGGCATCCTTTATCTC CTTTGATGATCCAGATCTTGCATATGTTCTATTTGTTCAATCTTCTCCGAAGCATGCACTTTTACAAACAAGTTAGATTGCATCTCTGTATAAG CTCCTGACTTTGTTGCTTTCGTATTTGCGGCGTTTTCCCGTATACAGCTCATCCTTTTTGTACTCTCCCGGATTCCGAGTTTGCCACCTTTCTT TAGCATCACGGCTAACCGTATTCAAATAAGTTTTTCAATTAGACTCCAATAAATTCTTTGAAAGCATCAACTGCTCCGCCCGAGGTTGATTATA CTCCTGAAGTGCATCCCACACATAACGTGGTGATATTAGAGCAGAAAGTGATTATTTACGATAGTGGTTGGTAGCCCAGCTTCAGAATCATTTA GGCCTGCTATGCACATTTCTGCAAGACTCCTTTTTCCGATAGCATATCTCAATGATGTTGGATGCCTCTCCGCGTGCCTGAGTTGCGAATATGT TGTTTAAGTATCAGTTTCGTCATCCAAATGTTTGCGAAGGCAGCTGCAACCGCCACCACGTTTTTGGAATATCAACATCATCATCATCATCAAT CTTTTCAACTTTTGGCTCTTCAACCTTAACGCCGTGGTCTTGGGTGGTCCTTTGCCTCTAGCGCTTCTTCTACCGACGATCAATTCGCAGACTA CAGTTACATGCATAGAAGAAACGTAGAAGATCTGAAGGACCGACATAAACTGTGAGCCACCAACGTCAGAGAAAACGAAGAGGAAGCGGTGATG ATGATGATGATGATATTTGATGCCCTAACCATTATATTTTAATCGGTTCTTGTTGATGATGATGGGTTAATAGATGAGATGAGTGTGAGTGTGA TTTCTGGGTTTCTGGATCAAGAGAGAGAGGCGGTGAGTGTGATTTCCGAGTCCTGTACACGTT |
Primers for UN06238 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | TTTGCCTCTAGCGCTTCTTC | 59.867 | 20 | ATCACACTCACCGCCTCTCT | 59.866 | 20 | 275 | 1649 | 1923 |
| 2 | TAAACTGTGAGCCACCAACG | 59.758 | 20 | ATCACACTCACCGCCTCTCT | 59.866 | 20 | 186 | 1738 | 1923 |
| 3 | TTTGCCTCTAGCGCTTCTTC | 59.867 | 20 | CACTCACCGCCTCTCTCTCT | 59.732 | 20 | 271 | 1649 | 1919 |