Simple sequence repeat (SSR)
>UN96668 TTCTTGTAAACACGGTAAAATACTTTTATTAATTTTTATTCTTTTATTGTACAAATTATTTCTGTATTGACATATATCTCTCTAGTATCCGTAA TTTGTTGAAGCAATAAAATCAAGATCTTTTCTTTAGCTTTGTGCTTCCATTTGAGGTGAAATTTTTTCCATTTCTCTGTTCTTGCCAAGAACTT CGTTTTGTCCGTACGATTGGTTCCTCTACTTCTTCTTCTTCTTGTTGTTCTTCAACTACTTCGTCTTTCATCATTGATTGTTGATAGTATTTGA ATGCCACTAACAGCACAAACACTGCCCAAATACGAGCAACGACTGAGGAAAAATTCCAAACAAGGGTGAATATACCAAAAGCAACCGCTTTCTT TTGAGAGCATGAATCCCAAGCATCCTTAAAGCGTTGAACCCAAAATGTACCATAACCACTTAGTTGAGAAGAATATGAGGAGCATATCTTAGGC ACTGTAAAAACACCAAAAAAACCCAATTTGGCCATTTTCCAAATAGTTATAGAGCTGCCACTTCTTGCCAAAATAAAGAGCAGCACTGCTAACT TCATTGTAGTAGCTGGATCACCTGAAAACAAAGCTTTGACTTTTAAAAGAAACTCATTGATGTAAGGTAAGAATAATTTCAATGCCCATATTGC TTCATCTTCACCAACAACATAATCTTCATCATCTATTGTATCACCTTCTTCTACAACACTCCTGAGAATAAAGGACTTAAAAATGAATCTTGCA GCAAGATAGATGAGACCCATGTAGGATATTACAGAAATGAAGCTAATATTAAGGTCTTGAGTATATGATGATGAGATAATAGTAAATGTCCCTA AACCAAATATCAATGCTGACTTTGATGCATCATTCCACATTATCAAATCAATGAAACTTTGCAACTTGTTATGTGATCTGTGGACTCTTTGTGA TGGTAATTCATTTGATCTTGAAATGACTCTAGGATGATTTACAACAGGATGAGGTTTTCCAAGTTGCCGTGGCAAGTTTGTTATGAATTAAGAT TAGGCTCAGATATGTATATGTTGGTCAGGTCATAGAGGTCTCCGAGTTCTGTTATGGCTGCAAAGGAATCCGGTTGCAAAGCAGGTATATACGT GTGATTTTCGCATAAAACATCTGATCCGTTCAATTATCAGTAGCATTAGAAAATAGCCAATTTGATCCTGAGCTTAGTCTGCTAGCCTCCTCTT TATGAGATCCTGCATCAGTTAAAGAACGGGCCTCACTTTGGCAAAGCACCTTAGGATGAACATCATTCATGAGTGTCACCTAGTGAGCCTTTGG TTTCTCGAGTTGTTTATTCTTTGCCACCACAATGTCAATCAATCATTTTGCTTGGTCGACAATTTTGGTTTATACCCCAGTGTCATGTTCTCCA TCGTTGCAATCAAGTTGCCAAAACCCACACCCAGCTGCTGCAGCACCTTTATCATTTCAGTTTTTTCAGTTATTTCCGTTTTTTTAGAGCTAGC TTCTTTTTTCCCATGTTTTGTGGCAGATGATGATGCAGTAGCATGTGTATCTTGTACTGTCTCCAACAAGATCATACGGGTATACTCACTTACA ACACCAGTCTGCATGCTTAGTTTTGCCACCTTTTCCTCAAGCTTTTTATCTTGTGAAAACCATGCTTTTGTCGTGTATTGCTCAATTTGTTGCT TCGCCAGGACCTTGTCAAGAGGTATGTCCTTTGGCCGCTGGACCTTCAGGTCAATGGTGAAGCTACTCATATCGGCACGGACCCCCCTTACTTT CAGAGTTTCCGGAAAACCACCCTTGTACTGCCCAAATAGTATTAATGGCCCTTCCGAATATACATCTGGTACAACTGATGGATAAACCTCAAGA GCATCAAGATCATCTAGACCATCAATTTCAATGTTGAGCACAACCGTTGAAGCAGCTCTGGAAAACAAAGCTTCCATTTGAACTACAACTGAAT CTGCATCAGGCGCAGCATCAAAATGGCCCCTACCAATCATTGCAAGCATTCGCAAAAAGTATTGGTTGCAGAATGAACCTATACCAAACGTGCA AATGCGTGGACAAAGCTCTGATCCTTGACTTCTTAGTTGCTTTTTCATAACTTCACAAATTTGTCTTTCATCTTCAATGGCCCCGTCGGTTATA AAAAATATTATTGGAAGTGATTTCTTGCTCCCAGATAGCATCTCTATGGACTGATTAAGAGCAGCCGACATGTTGGTGCCACCACCAGCAATGA AATTCATGCCAATCCAGTCGGTTGCTTTTTGAAGAGCTTCCTTTGTAGCCAACTCAAGAGTTGATGAATATAAGTAAGTTTGGTCATTAAACGA GTCCCCTTGATCCAGCTTTGACATTGCTGCAACAACCGCACTTTTTGTAGCTTCAATTGTCCTCCCCTTCATGCTTCCACTTATATCAACAACA AAAAGCACTTCCTTCCTGATCACCTTTTTGCTGAGATCAGGCCCTGGGAATAAGTACAAAGAAAACATCTCACTTTGGTCGATACTGAGTGACG ATGGAGACTGCAAAATGACGCCACCAAATGCATTGCTTTGAGGAACCGCATATGTAAACACAAAATTAGTACTTGACCACGCAAGAACTTCCGC TTCATACAAGAAAGCCAATTTCTCAACTACCCGCTTTTGCTCCTTCAAAGGATGACTCGCTGACCTAACCACAACCTCTGTGCCCAATCCAACA TTGACGCTCAACTCTATCTTTTCCTTTTTCGATAGCTTCTTTCCAGCAGGAGTAACATACTCTGGGAAACTGAAAGGAATATTTAACGTGAATT CACCGTCTTTATAAGATATTTTCTGTGACCATTTAACTTTGACTGAAAAATTTGAACCGCCATCAACCTGTGGTATAGTCAATGTAAATATATT AGGCTTGAGAAATCCACCATCTTCGGGTTTGCCTACACTTTCCGTCTCCCCCTTTTCATCCATGACAACTAGCTGCGTCTTATACGACTTTCTG ATAAGTTGAACCTCAACACCTAGAATTGAACCCTGTGGGCCCATAGGGACAGCAAGGCGGACATCACAAGCAGCACTCCCC |
Primers for UN96668 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TGTGCTTCCATTTGAGGTGA | 60.24 | 20 | AGTCGTTGCTCGTATTTGGG | 60.132 | 20 | 193 | 134 | 326 |
2 | TGTGCTTCCATTTGAGGTGA | 60.24 | 20 | GCTCGTATTTGGGCAGTGTT | 60.14 | 20 | 186 | 134 | 319 |
3 | TGTGCTTCCATTTGAGGTGA | 60.24 | 20 | GTTGCTCGTATTTGGGCAGT | 60.14 | 20 | 189 | 134 | 322 |