Chrysanthenum transcriptome database

Simple sequence repeat (SSR)

>UN95971
TATCGGCTTCCACTTGATCGCTTCACAAACTATGTAGTGAAAGATCCGGGCTGACCAATCTCCTTGAAAGCGTCTTACCTACAGTGACAATAAA
GGTTCTGATTTCCATAGGAGCAAGTTCCACAACCAGTTTTAGAGGATCAACGGGTCCACCCCTTGGGGGTGCGGTTTCATCATCTTTGGATCCT
TCTGCTTTCCATACTAGTCTTTTCTTTTCCATTTCGACTCTTCCTTGGTTAGCAGATAAGCTCATTTCCGATATTCCGGTTATCTTCCTCTTTG
CAAATAGCTTCTTCAACTCAACACTTGTCAAAACGGAGAGATCTTTGTCCTCTCCAATCTCGTATAAATGTGCCAAACGGAGAAGTACTCTTCC
ATCTTCAAGCTCCTGGAGTGTTAGCAATGCTACATTATCAGGGAGACTGTAGGAGGGATCCATTCCTGTAAAGGTCGACACTTGAAAGTTTGTT
CCTTCATTCCCATCCTGCTCAGTGAAGGCCAAAAGAAGTGGAGAATAGATTTCCTGACCATAGGATCGGCGCCACTTAGCGCCCTCTCCAACCG
GATCGATTCTAAGATAGTATTTCCCTTGGACAGCTAATCCTCTACAGTCCTTGCCAACACAAACTGTTTCATTTAATGCCTCTGCAACACCTTT
TCCGTCATCATAGAGCAATCTCCTATGGAGCATCAACTCCAATTGCCCATCAACAATGCTGGAGCCACCAATTGATCTATCTACCAAAACTGAG
AGCTCACTCTTATCGTCTTTCAGGTACATTCCAAGATTTATAGGATAATAGTTTCCGGCAACAGGTTGATTCACTTCAAGATTCCAGTCAGTTC
TGTAGTCTCGAATCCGTTCAAGGAAATCTCGCCCATTAGAATCTGTATAGAACTTTTTATTACTCTTTATATTGGTAGTGATCTGAGTTACAAT
CTCTTTCCCAACTCGGTCTTCAATAGGTATGGGACCAACAGTGAATTCGACTTCAGCGTGTTCTTTATTCTTGTACACTCTAGTGATCTGGTAA
ATCCATGGATTTATTTTCTGATGTACTTCCTCGTAAATTGGCCCACGGAGAACTGTTATATTCTGCTCCTGAGAACCGATAGAATATGAACCAT
TTGGCCGGAAAATATATGCTCCAGATGCCTGCAACCCGGTAGTGCCATCAAATCCAGCGTAATAGAGATATGATTGGCTCACAGAGGCTTCAAT
AGAGCTTCGACTATTAACATACTGAGAAAGCTTTCCTTCACTTTTAGAATAGATTAACTTCAAATTTCCAGTCCCTACTTCTACACCACCTTTT
CCAATTCGAGTATGCTTGTAGAGTGCTTGTTTTACAAAATTTGAAGCTGGCTTTTTTGTGCTCTGAATGGTGTAAGTGCTAAAACCCAGAGGTG
GAACAGATGCTGTAAATGCAAGCGTAAACTTAGGAGTTGAACTTGGTGATTTACCCGTGTATGCAGTGGCGTAGTAGTTTCTAAGGGCAATAGA
GTCTTTGACTACAGGAAGAAGTTGAGATTCAACTTGTTTCCCACTGGAGTCATAGACTGCAATATTATCGCTCACAACTGGAAGTCTTATAACA
TCGGATCTCTTCCACCCCAAAGAATTGTAGACCACAACCACCAACTTTTTGCCAGACGATAGATCAGCTTCAGTTGGAGGGCAGTAGCTTATGT
TCAGGAGCGGACACTGTTGAAAATGGGTTGCTGAACTTTCATGACCAGATTTCGATGATACCATGCCAGCTAATGACTCCGCAACCACCACTTC
AGCCTCCTTGTGACTTATTGCAAGCCGTTTTGCATAATCATTAGCCACGTGCTGTTGTGAAGTACCACTAACGGCATCATGATGCTGAGCAATC
CCTAATGCATCACCCAAAGAGTCTGTAGTGGGCCCTGCTTTGTTCCTTCCCTTCAATACTTCCAACTGTCTTGCTGCCAGATAATAGCCACTCA
ACATTCTCACATAGCCTTTGAGACCTGGCCTACTAGTAAAGTATCCTGTCCAGTAGGCATTTATGTCGCTTGCATATGGAAAATAGTCTTCTTC
CTTGAGAGGCCATGAGTCGGTCTCGGCATATTTAGCATCGGTGTATATAGACGGCGTTGAATAGAGAGCATTGACACGACCATCTTTATTGACG
TAATGAATTAACTTGTCCATATTACGAAACCATGATTCGGCGTACTGATATTTGAAGTCTGTCCCCATTGTCCACATTACATGATTCGAGCGAG
TAATGTTTGCCTGTGAGACGGCTGCAGCCACAAAATCATTAACCCGCTCTTGGACATTGTAGTCAAACAAGTTGACATCATCCTGCACTATTTT
AGAATCATCGTTGACTTCAAAGTAAAAACCACTTGGAGGTTCATAATTTTCAGGAAAAGCACCTGCAAAAATCTGAGAAGATGAACCAAGACTC
TTGGAAGCCCGCCAGATAACTTCGAGACGTTTATCACCTTTTCGTTTAGCTCTGTCTTGGTAATCAATTCGGCCAAAGAAAAGAGAATCAAATC
CAACCTCAGCCCCCAATAGGTAAGCCTGCACTGCCGAATGACCAAAGGGATCTATTTGCCAACCAATTCTTGGCGTTACATTGAACTGTTGCTT
GATAAATTTATGCCCATACGTTGTCTGATCAATCATATCAATATAATGTGGTGCTGCCTCGTCATGCATACACCAACCTCCATTTATCAACTCA
AGTTGACCCGAGCTAACAAAACCCTTGACTATATTTTTTGTTGCCTCACTCTGGTCCCTCCACCATCTCTGGAAAAACGCCTGTTCGACATAGA
CAAACTTGCGATTCTTATCGCGCAACAAAGCCGGAACCAAAGAATCAAGCACATTCTGAACACATGCTCCCTGAATAGAATTATTTGATCCAAC
ATAGTACTGATCAACAGTTTTCAACCAACCAACATCATCATGAGTATGTGCAACCAAATGAACATTCAATTTATCCTTAACAACACCTGCTCCA
GTTTCATATATCATATACTTACTTTCCACACTTTTAACCACAACACTCAGTAGAAACAACAACAACAACACTCTAACATCCATCATTAACCCAC
AGTAAATAAAAACTAACTTGTCCTCAACACTAAGTGACAACTATATATATATCATTGTTTGACTATTGGGTTTGGTAAATGTGACAAAATGACG
TCGTTTTAGTTGATGAGATGGAATCTTTTTTTTGTTATGGATAAAAAGGATCAAGAAATGAAAGTGGTTTTTTTTTAGTGTGAGTTCGAGTGTG
TGTGAAGAAGAAGAGGACGAATAGAAAGTA

Primers for UN95971 SSR

Primer pairForward primer (5'-3') Reverse primer (5'-3')Product
SequenceTemperatureSizeSequenceTemperature SizeSizeStartEnd
1CAACACCTGCTCCAGTTTCA 59.87320TTGTCACATTTACCAAACCCAA 60.12422195 29953189
2CAACACCTGCTCCAGTTTCA 59.87320TTTGTCACATTTACCAAACCCA 60.12422196 29953190
3CAACACCTGCTCCAGTTTCA 59.87320TGTCACATTTACCAAACCCAA 58.78321194 29953188