Simple sequence repeat (SSR)
>UN95971 TATCGGCTTCCACTTGATCGCTTCACAAACTATGTAGTGAAAGATCCGGGCTGACCAATCTCCTTGAAAGCGTCTTACCTACAGTGACAATAAA GGTTCTGATTTCCATAGGAGCAAGTTCCACAACCAGTTTTAGAGGATCAACGGGTCCACCCCTTGGGGGTGCGGTTTCATCATCTTTGGATCCT TCTGCTTTCCATACTAGTCTTTTCTTTTCCATTTCGACTCTTCCTTGGTTAGCAGATAAGCTCATTTCCGATATTCCGGTTATCTTCCTCTTTG CAAATAGCTTCTTCAACTCAACACTTGTCAAAACGGAGAGATCTTTGTCCTCTCCAATCTCGTATAAATGTGCCAAACGGAGAAGTACTCTTCC ATCTTCAAGCTCCTGGAGTGTTAGCAATGCTACATTATCAGGGAGACTGTAGGAGGGATCCATTCCTGTAAAGGTCGACACTTGAAAGTTTGTT CCTTCATTCCCATCCTGCTCAGTGAAGGCCAAAAGAAGTGGAGAATAGATTTCCTGACCATAGGATCGGCGCCACTTAGCGCCCTCTCCAACCG GATCGATTCTAAGATAGTATTTCCCTTGGACAGCTAATCCTCTACAGTCCTTGCCAACACAAACTGTTTCATTTAATGCCTCTGCAACACCTTT TCCGTCATCATAGAGCAATCTCCTATGGAGCATCAACTCCAATTGCCCATCAACAATGCTGGAGCCACCAATTGATCTATCTACCAAAACTGAG AGCTCACTCTTATCGTCTTTCAGGTACATTCCAAGATTTATAGGATAATAGTTTCCGGCAACAGGTTGATTCACTTCAAGATTCCAGTCAGTTC TGTAGTCTCGAATCCGTTCAAGGAAATCTCGCCCATTAGAATCTGTATAGAACTTTTTATTACTCTTTATATTGGTAGTGATCTGAGTTACAAT CTCTTTCCCAACTCGGTCTTCAATAGGTATGGGACCAACAGTGAATTCGACTTCAGCGTGTTCTTTATTCTTGTACACTCTAGTGATCTGGTAA ATCCATGGATTTATTTTCTGATGTACTTCCTCGTAAATTGGCCCACGGAGAACTGTTATATTCTGCTCCTGAGAACCGATAGAATATGAACCAT TTGGCCGGAAAATATATGCTCCAGATGCCTGCAACCCGGTAGTGCCATCAAATCCAGCGTAATAGAGATATGATTGGCTCACAGAGGCTTCAAT AGAGCTTCGACTATTAACATACTGAGAAAGCTTTCCTTCACTTTTAGAATAGATTAACTTCAAATTTCCAGTCCCTACTTCTACACCACCTTTT CCAATTCGAGTATGCTTGTAGAGTGCTTGTTTTACAAAATTTGAAGCTGGCTTTTTTGTGCTCTGAATGGTGTAAGTGCTAAAACCCAGAGGTG GAACAGATGCTGTAAATGCAAGCGTAAACTTAGGAGTTGAACTTGGTGATTTACCCGTGTATGCAGTGGCGTAGTAGTTTCTAAGGGCAATAGA GTCTTTGACTACAGGAAGAAGTTGAGATTCAACTTGTTTCCCACTGGAGTCATAGACTGCAATATTATCGCTCACAACTGGAAGTCTTATAACA TCGGATCTCTTCCACCCCAAAGAATTGTAGACCACAACCACCAACTTTTTGCCAGACGATAGATCAGCTTCAGTTGGAGGGCAGTAGCTTATGT TCAGGAGCGGACACTGTTGAAAATGGGTTGCTGAACTTTCATGACCAGATTTCGATGATACCATGCCAGCTAATGACTCCGCAACCACCACTTC AGCCTCCTTGTGACTTATTGCAAGCCGTTTTGCATAATCATTAGCCACGTGCTGTTGTGAAGTACCACTAACGGCATCATGATGCTGAGCAATC CCTAATGCATCACCCAAAGAGTCTGTAGTGGGCCCTGCTTTGTTCCTTCCCTTCAATACTTCCAACTGTCTTGCTGCCAGATAATAGCCACTCA ACATTCTCACATAGCCTTTGAGACCTGGCCTACTAGTAAAGTATCCTGTCCAGTAGGCATTTATGTCGCTTGCATATGGAAAATAGTCTTCTTC CTTGAGAGGCCATGAGTCGGTCTCGGCATATTTAGCATCGGTGTATATAGACGGCGTTGAATAGAGAGCATTGACACGACCATCTTTATTGACG TAATGAATTAACTTGTCCATATTACGAAACCATGATTCGGCGTACTGATATTTGAAGTCTGTCCCCATTGTCCACATTACATGATTCGAGCGAG TAATGTTTGCCTGTGAGACGGCTGCAGCCACAAAATCATTAACCCGCTCTTGGACATTGTAGTCAAACAAGTTGACATCATCCTGCACTATTTT AGAATCATCGTTGACTTCAAAGTAAAAACCACTTGGAGGTTCATAATTTTCAGGAAAAGCACCTGCAAAAATCTGAGAAGATGAACCAAGACTC TTGGAAGCCCGCCAGATAACTTCGAGACGTTTATCACCTTTTCGTTTAGCTCTGTCTTGGTAATCAATTCGGCCAAAGAAAAGAGAATCAAATC CAACCTCAGCCCCCAATAGGTAAGCCTGCACTGCCGAATGACCAAAGGGATCTATTTGCCAACCAATTCTTGGCGTTACATTGAACTGTTGCTT GATAAATTTATGCCCATACGTTGTCTGATCAATCATATCAATATAATGTGGTGCTGCCTCGTCATGCATACACCAACCTCCATTTATCAACTCA AGTTGACCCGAGCTAACAAAACCCTTGACTATATTTTTTGTTGCCTCACTCTGGTCCCTCCACCATCTCTGGAAAAACGCCTGTTCGACATAGA CAAACTTGCGATTCTTATCGCGCAACAAAGCCGGAACCAAAGAATCAAGCACATTCTGAACACATGCTCCCTGAATAGAATTATTTGATCCAAC ATAGTACTGATCAACAGTTTTCAACCAACCAACATCATCATGAGTATGTGCAACCAAATGAACATTCAATTTATCCTTAACAACACCTGCTCCA GTTTCATATATCATATACTTACTTTCCACACTTTTAACCACAACACTCAGTAGAAACAACAACAACAACACTCTAACATCCATCATTAACCCAC AGTAAATAAAAACTAACTTGTCCTCAACACTAAGTGACAACTATATATATATCATTGTTTGACTATTGGGTTTGGTAAATGTGACAAAATGACG TCGTTTTAGTTGATGAGATGGAATCTTTTTTTTGTTATGGATAAAAAGGATCAAGAAATGAAAGTGGTTTTTTTTTAGTGTGAGTTCGAGTGTG TGTGAAGAAGAAGAGGACGAATAGAAAGTA |
Primers for UN95971 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CAACACCTGCTCCAGTTTCA | 59.873 | 20 | TTGTCACATTTACCAAACCCAA | 60.124 | 22 | 195 | 2995 | 3189 |
2 | CAACACCTGCTCCAGTTTCA | 59.873 | 20 | TTTGTCACATTTACCAAACCCA | 60.124 | 22 | 196 | 2995 | 3190 |
3 | CAACACCTGCTCCAGTTTCA | 59.873 | 20 | TGTCACATTTACCAAACCCAA | 58.783 | 21 | 194 | 2995 | 3188 |