Simple sequence repeat (SSR)
>UN94005 CTGCAAAACTATAATTTGTGCTGCAAGAAGCATCAAGAGTAAGGTGAAAAATACATTTATTTCATCATCAAACCTTAGTTGGTAACAGCCTATA CATATGCTAAAAAGCTAGAAAGTTAAAGTAAATAACCCGACGAGACGGGACAATTAACTAACTCTTAAGGATGGTTTCCAGTGCTTCGAAGAAT AACGGGGCCATTTCGGGGCTTGGAGTTTTAACGGCACATTTAAGTCCAGGAACACCAATAACTGCTGTAAGTTCAATCAAGAAAGGGATTCCTT TTGGGATTTTGGCTGATAGATATAAGACGTCCTGGTTGGTGTTCTTACGTTTGGCAATAAAAAACATGTTTGAAGAAGATAATTGTTCAATGGT TGTATCAACATTGTTTATCACTACACCTGGAATGTCTCTTGAGACTTCATTGGAATCAGGTATTGACTTCCATGTCTCAAGGAAGGTAGGGCGT TCCATTCTTCCATCCTCGGTAAGCAACACAAGTAACGATAATCTATCATTAAAGTACCATACAGGCTGTTGATTGTTCTTCACCGCAATCTGTA AAAGTGAGTTTGGTGGACCTGGTGCTATATTCTGGAACAAGACCATAGGGAGAAGGGTTCTTGATGATGTTCCTGGTTGAATTTGTGGTACCTG AAGTGGTCCAGCAGCTGCAAGACCAAATGTATTCTTGTTGAATTGAATCATGAATCCATCCAGTGGGGTATTTGTGTTGTTCTCGAACATTATA CTGTAAAATATCTGACCATCCCTCCTTACCAGTTGCGCACTAATTTCTAGACCTTGACCAGATGCTGCTGGTAATAGAACTGGCAAAGGGGGCC CTGCAGCCGCTGCAGGCTGATCAGCCGAGACAATAGCATTATCATCACCACCGTCAAGACCCATAAGATCAAGTAAATCTGGCACGGGAGCAGG AGCTGGCTGCTTAGCTGCAGCATTATTGGATGAAGAAGGTGGTGGCGATGCACCATTATCAGCAACCAGTGAAGATGATGTTTCAGGATACCCT CCTTCAATACCATCGGGAAACTCTTCTTCTGTTGTTTGAACAGTTTTCACACGGGTTATGAATGTCTCAGGGGGTTTGTGGTATACAGAGGATA TGGTAGCAATGTTTGCAAGAAGCTCATCCAGGAGGGATGAATCCAATTGATTCGAATCATCACTGATTACCGGCTTCTCAGCTAAAACGACATC TTTAGCAGCCTCAGGGTCAGTTGAAAGAAGGCGCCAATATATGTAAGCACGGTCGCGGAGATCTGGATTATCGGTCTCCACAGTGGCGTTATTC AAAACAACCTGAATCATCTGCTGTGGTCCTTCAGTTGGCTTTTTTAGGAAAAGTTTCACTGTGGCTGTCAATAGCTGCAATTGAACTTGTGCAG GTTCTTCAGGGAAAGTCTCCAGAAAGCTTTCGAGAAGTTCATCAGCATTATCAATTCTTTCAGCATATTCACCAATTATCCAAATCATAGACGC CTTGGCCTCAGGCTCGTCCAAAGTGTCCAAACTCTCACATAGCGTGGCAATGATTGATTCATAAGTGTTAGGGTATCTTCTAAAGATATCCTTA ATGACTATTATAGCTTCTTGAACAACATAATTTACTTTAATCTTGATCAGCTCTAGAAGAACACTAATGCACCGCTCAGCTGCTCTCTCTAACT TGATAGCACAACGCCCAATAGCGCGAACAGCCTTTCTGACAAAATCTACATCAACTTCTGTAGCATACTCTTTAAACTCCAACAATACCTGGTC GATATTTCTATCTGAAGCAAGCTTAATCATGATCTCTAGCTTCTCCATTTTCACATAAATTGGATCGTTGTACTTGCAGAAGAACACCTTGATT TCATGAGCAAGGATTGTAGGACGCCTTTGTACAATAAGGTTGATATTCCTTAATGCAACATATTGTATCTCAGGCTCTGCAGAAAGTAATGTTA CAAGAGGAGGAGCCATTTTCTTGCATAGGTTCCGAATAACATCAGGACTGGTGATGAGTTCCATTTGTTGAAGGATCATCTTAACAGCTGAAAG AACAACAGCACAATTTGCATGCTGTAGCCTGGGAGTGACTCTCTCTACAATATTTTCGGCTTCACGCGCATCAGCTGCCTTGTACTTGGAAAGA GCATCTAATATAAAAACTTGGCCCCACTCGGTACATTCATTCAGAGCTGTAAGGAGCTTTGTAAGTGTATTGCTGGTGATCTCTAAGATGGGTT TAGTGCTGTTATCTTGAATTTCTGCAAGAGCTGCGACAGCATTTGCTACCACCATAGGGTTATTGTCAGATATTAAATCCTTAAGAGCATCCAG AAAACCTCTATCTTCAACTAGCTCAGCGTTAATGTCATAAAGTTTGGCGACACATATAGCTGCTGTCTTTCGAACATAAGGATCATCATCCTTA AGACACCTCTCAAGAGGATCACAAAGATATTCTGTAATTTTATCAACTCGGATGCACCCCATTGTTCGAACAGCTAAAGCTCGGATCAAAGGAT TTGGGTCCTGTGTATCCTTGACAAATGTATTGACTGCGAGTATTGCCAGATCAGGCTGACTTTTAGCATAATTGATGAGATACAAGTACACAAG CTTTTTGAGCTCCAAATTTTCCGTCTGCATACAGTTCAGGACATCCGTGAATAGTGACGAAACATCCTTCCCTACAGTCATAGCAGCAATAACC TTTTTAACCGCATCTTTTCTCTTATCCTTGTATTGTGAATTGAGTTCTTCTTTGAGCTCAGGTATTTCACCTTTTTTTGTTGTTGAGAAGTATT TTGAATCGTGTCCGCTCATTTTTATTCTGATCTGCCACCGGAGGAGTCAACCACACGGAGGAGGAGGAGGAGGAGATTACAGGGTGGATGTTTC TTCAAGTGGAGATGTGTTGTCGTTTTGATGTGTGT |
Primers for UN94005 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GAATCGTGTCCGCTCATTTT | 60.081 | 20 | CGACAACACATCTCCACTTGA | 59.736 | 21 | 114 | 2823 | 2936 |
2 | ATTTTGAATCGTGTCCGCTC | 60.081 | 20 | CGACAACACATCTCCACTTGA | 59.736 | 21 | 119 | 2818 | 2936 |
3 | ATTTTGAATCGTGTCCGCTC | 60.081 | 20 | CAAAACGACAACACATCTCCA | 59.6 | 21 | 124 | 2818 | 2941 |