Simple sequence repeat (SSR)
| >UN93836 AAAATTACTAGTTATCGATTCGCAATCTGTATAAGAATGAGATGGTTTGTAATAGGCATAGATCAAAAAGGAAAAACATGCATCGTCTTCATCA CTTACTTTATACTTTCAACGTGAAACAACAATGGCTACTACTACAACTACTTCTACGGATCCTCTTCCTCTACCTCTTCGTCTTCATCTTCATC GTCATCTTCTTCCGCGTCTTCATCTTCATCTTGATCTTCAATTTCATCATCAACTTCAACCAGCCTCCCACAAACCCATCTTCTTCCTTTGCTT CCTTTTTCCTGTTTCTCACCATCTGCTCCCACTTCCTTCATCTTTAAACTCAAATCACTCCATGATGATGATGTCGACGACGAGGATGATGATG ATGATAGCTTTACATGATCCATTCCATTCACATTCGTCTGTAAACTCGCCTCACCAACCTTTGCAGTTTCTACAGCTCCATTCACTCCTATTTG TTTTATCTCACTTGCATCCTCAACTATCTCCTCCTTGTCAGGAACAGCCCCTGCAGATCCACTATTACCCGTCTCTATAGACTTGATATAGCTA ATAGCTTCAGCAATCAACTTCCTTGTTTCAATTAGAGATGCTTCAGCCATTGGGCTCTTTGCTGCAGCCGCCTCTAACGCCTCTGCAGCTCTCT GGGCTTCACCAATTAAAATATTGGCTCTTAAAATAGCTTCACTTATTTTGGGATCAGAAGCTGCTCTTTGTGCTCGGATACTCTTTATCATCTC TAACTTGTATCTAGCTTGTGGGTCCTTAAATCTGGCATGTGGTTGTGGTTCCTTTACAGGACCGCTACTGGTCTTCACCTTAGGCCGTTGACTT CTCATTCGGGTGTCAAACGAACTTTCTCTCTTCTTCACGGGTTTTTTGGGTTCCTTCTTAATCCCCCATTCTGGATCTCTAGTGTCGGGATCTT TGCCACGGTGTTTTGCTATCCCACTGTATACCCGATCACGGTATGCAGGGTCAGCCCATTTGGCAGCAATGGCTTCTGAGATTTTCTTTCTTTG TTCAAGGGTCTTGGGTGCTCTTACTCCTGGGCCAGATCCGCGTTTCTTCCTTCTTGATTCAATACCCTCTCGAAATTCCTTATCAAGTTGCTTG CTCATTATCTCATAGGAGTTCCACTGAAGCTCTTCCTCACCATAAAGCCCCTTTCTAGAAGCTTCTGCAATCAAGTCAAGCCACTCACGATGGC AACGGGCTATCATCCTACGGGTGAAACGACGTCTATCCCATGTTTGCCGCACTGCAGCCGCAATCTTTTGTCTTGTTTCACGAGTTTGATTATG TATTCCCTTCATCAGTTTCTTCTTGACCTCAGGATTACGCATAGCAATCTTGGTTCTCTCACGTATCTTCTGCCGGGTCTCTGGACTATGCTTA ACACCCTTATTCCACGCCTCCCGTCCTTTATTCGCCTTCGATATCCGATTCCGTCTCAACAACTCCTTCTCATCATAAACTACCTTATCCGTCT TATCCACCTTATCCTCCCCAACCGAATTCGGCACCTGTTGGATTACCACACTATCATTCTCCTTATCAGAACACAACGGTTCAAGCGTAGCAAC TGCTTTAATCATCAATCTACCACCGTGGCACACCGGAACCTCGCCATACCACCACTGGAACATTCTCCGGTTACCCGAAAACAATGAAACATTT TTATTATTATAATGAATTCGGTTTAATCCTATTGAATACAGGTTGTTGTTCCTGAACGAATATTGTACAGTAGCAATATCTAATAAAGGCATGA GGAGGACATTCAGTCAGGAAATGAGTTGAGTGTGTGAAATTGAGTGTGAAATAGTGTGTGTGAATATGATTGACATGAAAGGTGAATAATAATA ATAATTAGGGTTTGGTTTTTTACAGGTTGTTGAAGATGAAGATGAAAAGGGGAGATAGCCACACACACA |
Primers for UN93836 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | TTCTTCCGCGTCTTCATCTT | 59.955 | 20 | AACTGCAAAGGTTGGTGAGG | 60.149 | 20 | 250 | 195 | 444 |
| 2 | TTCTTCCGCGTCTTCATCTT | 59.955 | 20 | AGGTTGGTGAGGCGAGTTTA | 59.734 | 20 | 242 | 195 | 436 |
| 3 | TGCTCCCACTTCCTTCATCT | 59.803 | 20 | AACTGCAAAGGTTGGTGAGG | 60.149 | 20 | 139 | 306 | 444 |