Chrysanthenum transcriptome database

Simple sequence repeat (SSR)

>UN93826
GGCACAACAATAACTTTTGAATTAAGCATGGCCCATAAAGACTCTTAGTCCATTTACATCTCCGTCATTTTTAATTTTTTTTACTTTCATAAAA
CGGAAATCACTATCAATATCAAAACTAGTTCAGGTGCTTACTTGGATCTCCAACCCCGAGATCAGATAGATCATCCCCAAAAGAAGATGAACCA
TACAAACTCCTCCTTTCAGCAGCTCGATCCCGATAGGTGGTATGAGGCTGTTCTTTAACAGATGAAGCTGACTGTGCAGGCAACTCAGAAAACC
GTCTCTTACCGCTCACAGTAGGTGCTGGTGGTGTGTAAGAGCCTAAAGCCGATGCGTCTGTCCTAAATGGCACTGCTGAATTGCGTGCTTCAGT
GGCCATTGATGAACCGATAGACACATTTGTAGATGGTGCCACATATGCAGTATCTGATTTCACCACTCCTCTACCGGATCCCCTTATTACGCCT
CTTAAAGTCCCTCCAGAGATGTTAGCTGCAAGCCTGGGGATATCCTGTGCATCTAAACTGTCAGGCTGAACAGATGTGTTCACAGAAACTGCTG
GAGCTGTATTGTCATTTACTAATTTGCCCTTTGTTGATGATCCAGTAGGGTTCGATCTTTCTTCTGTTAGAGCAGATGAATTGCCATCAAGAGC
CACCCGTGGTGCTTGACTTTCGTGACTCCTCTGCTTCCACATGGATAATACATTACTCATTTTCTTCTTGTTAGCCAATATACTACTTTTCGAG
GCGAGTTTTATTTCTTTCATCCTCTCTTTCTCCTTTTTCTCTGCAGCCAAGGCAGCAGCAGCAGCAGCCTGAACAGCATCCGGCAATGAAGTAG
TCTTATCACTTGATGTTATTGTAGCTGCTGGTGCAGATATAACTACTTTTCTACTGTTAGAACCATCAGGCGCCTTGGAGGGTTCGTTCTCTTT
TCCAGATGTGTTACCATTTTGATCATTACAAGGGACATACTGCTGACTTTGGTGATCATAAGAATACCATATCCCATTATTACCATCGTAGTAC
AGACCTGTATTTCCATCGTAGTAGAATCCAGAAGAAGCATCATAGTAATAGCCAGATGCTTCATCCCAAACAAAACCAGCTTGTGGAGCTGAAG
CATCCTTTGGATCTCCACTCTGGTCCTGATTGCCATTAGATTGTTTGTCATCGGGATTGTATTCTTTTGGCGCCCATCCAACAGCATCATACTG
CTGAGAAAACGCTGCAGCCTCGATTGCTGCAGCGGCAAGGCTACTAGAGTGAGAAGAGGATGCACCAGATCCTGGCCCAAGGATGCTTTTTGCA
TATGCTACTCGTAAAATTTGGCCATTTTTTTCCAGTGTTGTTCCATTTGTTGCTTCAAGGGCTTTGGTGGCATCTTCAACCGAATGGAAATGTA
CAAATGCAAATCCTCTTGAAACATGAGTAAATTTGTCTCTAACAAGACGAATATCCTTAATTGGAGCATTCTTAGAAAACTCATAGCGAAGCAT
TTCCTCATCAGCATTTTCATCCAATCCTCTCACAACCAATACATGAGTGGGACCTGTCTCTCCTTTCTTACCAAATGAAGTAGGGTTTGATGAT
GACATGTCAGCCAGCGGAGCATCGTCTGTCCTAGGTTCATTACACTGAAAGCACGATGTCCTCCGTGCAAAATTGACGCAGCCACATATTATGC
ACATCCAATCAGAAATTAGTGTAGTTCTGTGGTTCATATGACCTGACCTCGATGAACCATCTGATCCGGAAAAAGGTCCACCAGCACTCCCTGT
TGGCTTACTACTGTACTCAAAGAATAGCTTCCTACCATCTACGACAACACCCTCATCTCCAACCTTGTCCATCATCGAACGGGCAGATCCCGTG
GAAGGAAAATCTATAAATGCAAATCCACGGGAAGTGCCAGAATTCCGCTCCTTTATGACACGAACATGGCGAAGAGGTCCCCATTCAGAAAGAA
TTTGATGCAGATCTTCTTCAGTTGTCTTTTGGGACAGACCCTTCACAACGACAGTAGCAGATGGAACCGCTGAATAATACTCATGATGACGTTT
TTCTTCACGATCTCTTCTTCTATCATACCTATCATCATCGTAACTGTCCTCCCGGTGACTTCGGCCACGACTACGACTTCGAGAAGATCTAGAC
CTAACACGCTCATCCTGTCCATGAGACCGAGACCTAGAACGCTCGTGCCTTTTGTATGGACTTTGATCCCTTTCTCGACTCAAACCTTTCCTCT
CCCTTTCTCGATCACGGGATTCACGCCTTCGCCAACTACCCTCCCGTCTACCACCTCTGTCATAATCAGAATCATAACTGCGTCTTCCATAATC
ATAATCTCTGTCACGGCTATCCTCCCTGCTCTGTGACATACGAGGCCTGTAGTCATAGTCGTCGTATGGATAATCATCACGGTCCCGTCCACTA
TATCTCTGAGACCTTTCATAACCATGGTCATCATAGTAATCAGCGTCACGATATCTGCCAGCTTCACGACCCATATCCATTTCAGGATACGGAT
CAACATGCCGCCTTGAATCTCTATCAAGAGGATATTCTTCCTCATAAGTTCGTCTTCTAGATTGAGGCCAGACTCCACCTGCTGCAGGCGGAGG
AGGATAATTCTCCCTCTCCAATACATCCCGAGGGAAGGCGTTTCTTGGATAGATGTCATCTCTTGGAAAACGTTCATCTAAATATCTCCTATCA
TCATATGAATCACCCGCACGAAAATGAGGTTCGTGGACAGCACCATACCGTTCGGGGGCCTGTGGATTCAAGACAATAAGGTGTGTCAGCAAGT
TATAAGGATGGAACTAGAACGATAATCGATTCCATATCCTCACTGTCCCGTGACTTGCTCTCATAGTGGTGGAATATATGAGAGTCACAAAAGC
CCTAACATCTTGTATATCATCCCATATATGTGATTAAAAAGAAAACCACAATTACGCTGTTATTTTCCCATCCATGCTGAGGACCATAGCGACC
AGGATCCATTTGAAACACCCGTCAATGCTACCCCTGCAAAGCTCTCGATGATCGCTTACGTTACAAAGCTTTCCGCTTAATCCGATCGATCAAA
TTAGGTTAAATTCTTCGAACGTAATCAGACAAATAGATCGATGATTGTTT

Primers for UN93826 SSR

Primer pairForward primer (5'-3') Reverse primer (5'-3')Product
SequenceTemperatureSizeSequenceTemperature SizeSizeStartEnd
1ATGAATTGCCATCAAGAGCC 60.04320ACTACTTCATTGCCGGATGC 60.10320208 640847
2GTGGTGCTTGACTTTCGTGA 59.8820ACTACTTCATTGCCGGATGC 60.10320184 664847
3TGGTGCTTGACTTTCGTGAC 59.8820ACTACTTCATTGCCGGATGC 60.10320183 665847