Simple sequence repeat (SSR)
| >UN92605 CTTAAACAAAAATATAAACATAAGTAGAATGGAAAATACATAAACCAAGATGAAGTTATGCGAAACCAATAAGCATGGTCGCTATCTTCATTCA TATGTGAATGTTTCATGTAAACAACATATCCTTAGTTTGGTAGCTCAAAATATAAAGAGTACATATACTGCGACTCAAAAGGATGGATAGTTTG GTCATATTGCTAAAAGGCCAACCAGTCATGATTCAGTCATATGCTTCTTCCCAGTTCTCCACTACATCATCATCCTGTTTTAATAAACTCGCTG ATGATGATGCTGGTTCATTCTTGGACGACGCCACATTAGTTGCAGCTACAACTTTACCTGATACTTCTTGAGTAGTGACATTAGTACGAGCAAC TTCAGATTCCAGAGCACTCCATCTATTTGCTGACGATGCAGTGGCACTAGCGATTTTAGGATTCTCTTTTACTTTCCATGGGTTGTTAATGACC GGCTCTGGTGCACCACTCCATGAGTCAGATGATGCAGCAACAGCTTTCTTCCACGGATTGGTTGCCGGGACACCACTCCCTCCCCAAACATTAC TAGTACCTCCAGTAGCTGATGTACCACCATTGGCGGTGCTTAGTACAGCTGCACCATGATAAACTGACCCATGATCTAACCGCCTCATAGCAGT TGCAGCTCTGGTCGGATCACTGAACACAGCCAATGCATTTTTGTCATTCAACCAGACCAATTCACATTCCCCGCCAAACCTCAACACCAAGGCA CTCACATCTGCATCCCCTGGCAGATCAAACAAAGCCACAACTAGCCTAGGATCCATGTCTACTAGAGGATCTAAAGCAGGGGGTTGTATCAAAT TTGATGGGTTCAGTCCTTTAGAGCCAAGAATCCGACTAGGTGTCTTGGACTTTGGTGTAACATGAACCACAATGAATCGTTTTGGCTCCCAGCC AACAGCACGTATGGACAGCTTCCATCTCTCTGCAATTAGTTTCACTGCATCTCTCTTCTCTTTCAACATCGGACAGAAGACATGAACCTTGACA GCACCTCTAATCCTACCAAGAACCAACATTTTGCATCTCTCTTCAATTGACAGTACCCACTTTGGATCACGTCTGAACAAGTCTCCTATCATAT CAGAAACTGCACTACTTTCACCAAAATGGAGCGCCTCCAAACTTGTATTAACCCCAAAAGCATCTGCGAGAACTTTTTTACGTTCCAATTTTGA GCATTCATCGTCACATACGAGTTTTCTCTGTCCAAGCGGGGTCCTCTTACCATTTGCTTCATCTGGTTGAAGTGGCGCAGGCAATTTCTGAATG GCAAAAGCTTCAAGAGCAGTATCCGCATTGTAACCACTAGTATTGTTGTTGCCTCCGGCATCACAAGGAACAGTTGCGGTTATTCGACCACAAG AGCATGTTATTGTGACAGGGAACTCGCATCGTACATCTGGACATGTATTATGAGGGTGACAAAGACTAGTACATGTGTGCCTGCAGTCTCTCCT TGGTGCTCCACATGTCTGACCACATGAAAGCTTTACAGCACCAGTAGAAGTAGATCCACCAGATGATGATGATGATGAATCACATGGAGACGGG TGGCAAGTCCTCGAACATGAGTGCATCCCACACTGCCTTGTCTTGCCACAAACTTTATTACATCTAATATCCTTCGAGCCGCATGGTATGTTTC TGAGGACAAAATGTCCACCAATGCATTCCTTGGCTATAGGAACAGGACATGGTGGACAATCCCCAAAGTGGCAGCTGTGAGAAGACACGTGACC ACATGGTTGAGGAACTGAACATGGGTATTGACAAGAAGGTGGCGGGGTACCACATGGTAGCGGCGGAGGAATTGAAGATCGCCCACAAGCACAA GTGAGGTCAGTGAAAATCATCTCTTGGCAAGGAGGGCAATAACCACTGTGACAAAATGATTCACAATCATGTTGCCCACATCTTCGCTTCTTTT CACAAGGCATAGAACACAAGTGTGGGTCCCGACCCTGAACGGGAGCATTATTCTTGGAATTTGACAGCGGGCAGCACTTGTCACTGCAACGGTG TCTACCACAGCTCTTCTTTCGCCCACAAGGTTTATCACATCTGAATGTTGTATCTCCTTCCATCATAGTGGTGGTGTTAAAACATTCCACAGTC CGAGAAGTTGATCCACAACGACATTTCTGAGTAACCATTACCCTACACGGTGCACACGACCCTGGATGACATGTCTCTTTACAGCGATGTAACC CACATGAGAGGGTTTTGTCACATATCTTAGAGCAGGTTGGGATTGGATCTAAACAACTTTTTCTCTCCTCTTCTAAGCTTGATTTACCACAATA GCATGATGTGATCCTTCCTGGCAACAATTCACAGTCCCCACAAACACCAGGATGACACGTTTCTTTGCAGACATGGTTTCCACACCCAAGAGTT TTTTCACACGACGAATTGCACGAAAAGAAACCATCTCTAACTACATTCACATGTCCCTTCACAGCCACGTCACCACAAACAACCACCTCATCGG TTTTCTTTTTACAGAAACAAGGTGCATTAATCTTAACATCACAAGAATCACATGGACCAACATGACACGTCTTGAAACAACAATGGCGTTGACA ATTTAGCGGCTTACCACAACGCTGACCACATGTAATATTTGACTTCTGACTCTGATCAGAGCATCTTAAAGCAATCGTTTTCTTACCGCAAGGA CAAATCCTTGGTGGAGCATAAGCCTTACAAGGCGGACACGGACCAGGGTGGCATTGAACAACACAACTATGACGACAATGATCACCCTCATCAT CATCATAAGAAGCAGCAGCAGCAAGGTCTTTGTCAAGCGCCTTTCCACAAGGTTCACCGCAAGAATGAGGTGTAAGATATGGATCCGATGGTGG ATCCTGCCTTTTTCCACAAAAACAGACATATCGAATCTCTTTAAATGACGTAAGTTGGACCGACTGACACCCCGGGCATCGCCAATTAAACCCT TGATTTTTCTCAGCAGATAAGTCTATAGAAGTAGGTGCTCTAGCCCATTTCTTTGTACAATGCAAATGAAAGATCGAAAAACAGCTTGAGCAAG ACCATACAGGGGCCGAGCGTCTCACCATATCGTAACATATCATGCACTCAATTGTACTTTTCAAGAGTTTCTCTTGGATTTCTTGTACAAGCTG TGGTAAATCTTCTTTTGAAACTCTATCATCTCTTCTTCTGTTATTAAGATTTTGCGAGTTTGAGTTTGAAGATGGGGCAGTATTAGCATCTCGT GCAGTGGTTGTGACAACGGTAGGAGTAGTAGCAGCAGTTGTTGGACCTCTCTGAATCCATGCTTGACGATGATTAGAATTAGAATACCTTGGCC TTCTATCTCGAGCTTGGTAAGAGCTCATATCAACAACCAGATTTGAATCGGCGAAAGAAATCCCCAAAATCTGCTGATCTGAGAATTTGATTTT ATAAATGAATTTGTTGTTGTAAAAAATTGAGCAGATTAGGGATTTGTGAGAATTAGGGGGGTGTTTGGTTCGGACACACGAGAGAAT |
Primers for UN92605 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | ACAGTTGCGGTTATTCGACC | 60 | 20 | GATGCACTCATGTTCGAGGA | 59.794 | 20 | 240 | 1386 | 1625 |
| 2 | AGTTGCGGTTATTCGACCAC | 60 | 20 | GATGCACTCATGTTCGAGGA | 59.794 | 20 | 238 | 1388 | 1625 |
| 3 | GCAGTCTCTCCTTGGTGCTC | 60.143 | 20 | AGAAACATACCATGCGGCTC | 60.103 | 20 | 201 | 1493 | 1693 |