Simple sequence repeat (SSR)
>UN92479 TGTTTAAAAAGCTACATAAACCAAAATGGCATAAACATATAAGGTTACTTTGTTATTTCAAGATAAGGTGACACGGTATATGACCAGTCATTGA ATAACAGTTCAAGTATATAACAATAAAACATACTCGGTCCCCGTGGCGTGGTTGGTAGTCACCCGGGTCGGAAACCTGATAAGCCATTGCTGCA GTTCCAGACGCTACCGAAATATCCAAAATGACTGCTGTAGAGTACTCTCAAACCTTCGTGCCAAGATTAAAATCTATTTGACCTCTTAACTGAA GTGAGCCATCTTAAAGTAACCTGTCTGATCTTTTGAATTGAGTGACCCTCTGACTCGTTGCTTTAATTTGACCAATTTAGAGAACCTGATGTGG TCAACCATATGACATATGTGCGCCGTTCCTGTCTTGTTCAGGTTCGGAGCTTGATTATGTTCATTGACTGCAGCCAAAAGCACTGTGAAGCTGA AGCTGTACTTTTTGTTCGGCAGTCTTTCTCACGCGAATACATGCTCAGTATAACCGTTATTCCAGCTCTTAAAGCCGGTTGGATTTAAGCTCAA GTATCTTCAATTCTTTGCTGGTTACCTTTATAATGAAGTAGCACAGTCCTTCTTAGCATGAAATCTTTCGTCTACCCCCAGTTGACCGATAAGT TTCGTAAATATGTAAGCCTGCATATGTAAATGCATATATTGACCGTCTTTGATGTCATTGTCGTACCCTTTGAGCCAAATTAACAGTGGGATTT GAAGAAGCATCCAATTCCCAATTAAAGACCAACGCGCCTGTTTCAACTGCTGAGATATTAGATTCGTCGATACCATCACTTGTCATAGTCGTAA TAGCAGTCAAGATCACGTGAATAAGATCTTCGGCACAGATGATAGCGAATTTTCCAAGTCCCTGTATAACAGTATTGAGTCAGATGAAGCACCA ACCGGTAAATGACTATCAGCAACAGGAATGCACAGAGAATCCTGAGCACGAACCACGTCCGTCACAAAATCTAGTACCTTTATCGCACCAAGCC ACGCTGCAGAAATATAGACATTGGATCATAGATGTAACAGACCCCCTTGGCAAATTCATTACCTAAAAGGCATCCTTTATCTCCTTTGATGATC CAGATCTTGCATATGTTCTATTTGTTCAATCTTCTCCGAAGCATGCACTTTTACAAACAAGTTAGATTGCATCTCTGTATAAGCTCCTGACTTT GTTGCTTTCGTATTTGCGGCGTTTTCCCGTATACAGCTCATCCTTTTTGTACTCTCCCGGATTCCGAGTTTGCCACCTTTCTTTAGCATCACGG CTAACCGTATTCAAATAAGTTTTTCAATTAGACTCCAATAAATTCTTTGAAAGCATCAACTGCTCCGCCCGAGGTTGATTATACTCCTGAAGTG CATCCCACACATAACGTGGTGATATTAGAGCAGAAAGTGATTATTTACGATAGTGGTTGGTAGCCCAGCTTCAGAATCATTTAGGCCTGCTATG CACATTTCTGCAAGACTCCTTTTTCCGATAGCATATCTCAATGATGTTGGATGCCTCTCCGCGTGCCTGAGTTGCGAATATGTTGTTTAAGTAT CAGTTTCGTCATCCAAATGTTTGCGAAGGCAGCTGCAACCGCCACCACGTTTTTGGAATATCAACATCATCATCATCATCAATCTTTTCAACTT TTGGCTCTTCAACCTTAACGCCGTGGTC |
Primers for UN92479 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CTGCAAGACTCCTTTTTCCG | 59.986 | 20 | GCGTTAAGGTTGAAGAGCCA | 60.386 | 20 | 202 | 1512 | 1713 |
2 | TGGTAGCCCAGCTTCAGAAT | 59.836 | 20 | GCGTTAAGGTTGAAGAGCCA | 60.386 | 20 | 246 | 1468 | 1713 |
3 | GGCCTGCTATGCACATTTCT | 60.243 | 20 | GCGTTAAGGTTGAAGAGCCA | 60.386 | 20 | 220 | 1494 | 1713 |