Simple sequence repeat (SSR)
>UN91802 AGGAATAGTTGGGCTTTTAGGAAACAAGCATCTAATTCTCTCTCTCATTATAACTAAAAGAAGCAACAAATAGCAGTTTAATTTAGTAGCAAAT AATTACAAATAGTTACTCTTGTGGTCTATCATAACAACAAAAATGCAAAGAAATCTCAATAGTGTGCAAATCCAAACCTGCACGATTTAATTGA ACATTACCAGATATGTAACAAATGATAAAAAAACAACACATACATGTCCAACATGTTGATATCAGTAAGTAGGATAGTAGTACCCGGCACCATT TGCTGGCGGAACACCGTAAGGCATCATGGGTGGTTGTCCTGGAGCCACATATCCACCACCATTGATCTTGGCCAAACTAACTTGACCTTGCATA CCTTCCCTAGCATACTGTTGCCAAACCATTTGTTCTTGAACCAACAACTGCTGCTTCTTTTCTATGTCCGCCATTTGTACATAAGACGGCGGAG GTACACTTAATGACGCTGCAAATGGGTCACCCCCTACAGCTTGAACTGAACCATCAGGAGCCGGGAGTGCCAAAACAGGAGTAGCCGACTTGTT TGGCAATGCCACACTACTAGCACTGCCACCGGTTACCTGAGACGTGCTCACATGTTGCCTCACCATTCCTTGGTCATACATTCCATTAAGAAGC AAAGGGTCAAGACCACCACCCATTGTCGCCTTTTGTTTCTCAAGTTGACTTGTGGTTTCCACCAATGCAAGTTCCCAATCAGCTTTTCCAGCCT CTGCAGCTGGATTCTGCCAGGCGGAAGTTACTTCAGATTGCCCATTGGATCCAAACGCTTCCCAATTCCCATTACCGTTGTTTGCTGCTGGACC TGCAAATAACGCCAACGCAAATCTATTTCCTTGATCATCACCCGTAAATGCTTCCTCTCGTAGGTCCACTAAATCGCCTTGTGGTTTAGGTGGT GACGGTGGCTCAACCACAGGAGGTGGAGGAGGAGGAGCCTCTGGTGCTGGCAAAGCCTTTATTTCATTCATATCAGGAACTGGTTCTTCCTCTT TAACCTCTTCCACAACCTCGGGTTTCTTCTCTGGGCTTTTCGTAGCTCTTGCTCTATCTCTCACAAATTCCTCAAGTGTCTCTAGCAATTTCGA AGTTATCTTTTGAACTTCTGGATACTCCGATGATCTTGCAATACCCATATCCTTGCACCAATTATAGAAACCTACCAGCTCATCAATCTGTTTT GCAGCACTAACGTAACAATCAAAAGCCTTAGCGCAATCCTGTTGTTCCATGTCAAAAAATTTATCAAGCAAAACAGCTAAAACCTCACATATAT CAGCATAAAGTTTGAAACTTTCTTGCACAACAGGGTATAGCGCAACCAACACCATCCTACTGTTTCTCGCCAGACCAGTAGGCCGGCATGACAA CACCCGATCTAAAAGCCTCTGTAAATGTCCCATCTTTCCAAATATCCTCTCGGGTGTCATATCCCTCAACGGAGTAGCATCTTTCTTCTCCTGG GACGATCCAGATGCCTCTCTCACATCCCCGTAAGATCTTACCTTCCTCATATTTCCATACCCAGGCTCATCACGAAACTCGTTATAATCATAAT CATATCCCCGATTCTGTGGCGATCTCCACCTATCATCCCTTGACCTTTCATTATCACCTATACCACCACCGTTTTGCTTCCTCTCATAAGCGAT CATATCCAACCTCTGGTCCAAATAAAACCCATACGTCCGCACAAAAGTGGAATGATCCCACGAATTAGAATGCGCCTCATCACGAAAATCCGAC ATATTAAGCAACCTAGTTCCTTTCCTAGTAGCATACATAACCTCCTGCTGGAAAACCGAATCACCATCATTCAAAAGCCGATGTACAAGCACCA AACACTTCAACGCAACAATCCAATCACGAGTCTTGCTCAATCTCTTGGACACAGCATGAACACAAGCACTAACATATCCTCGCGAATACGAGGT AAGCTGTAAAATCTCTCTAATATACTTCTCACTAGCTGGATCATCATCATGACTCGTCGCTTTGACTATCGCAACTTCTAGCTCGGGCGCCATA TTACTAGCCACTTTCGCGATCCCAATACTCGTTTGATCCTTCACTGCTCCAAGAGTCTTCCTAAAAGGTGCCATTGTTCTCGTTCTTCTTCACA CAAACCCGTTAAACGACGATCTGGAGTAGAAATGAAGTTGACTTTGATTAGATCTGAAGTTTGAGCACTACCGGAAACACGTAGTGAAGGTGTC GGTGAAAGTGTGTGTGTGTTTGTGCTGAGCTGGATATTGTAAAGAGAATAGAAAGATGTGAGGAGGAGTTGAATTTGGTGATGAGATCTAGAGA GAGAAATTCGGGCGGTGTCCTGTCTCAATTTC |
Primers for UN91802 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | ACCCGTTAAACGACGATCTG | 59.993 | 20 | AAATTGAGACAGGACACCGC | 60.119 | 20 | 216 | 2166 | 2381 |
2 | AAAAGGTGCCATTGTTCTCG | 60.11 | 20 | AAATTGAGACAGGACACCGC | 60.119 | 20 | 251 | 2131 | 2381 |
3 | AGGTGCCATTGTTCTCGTTC | 60.119 | 20 | AAATTGAGACAGGACACCGC | 60.119 | 20 | 248 | 2134 | 2381 |