Simple sequence repeat (SSR)
>UN91748 CTAGACTCATCATCAAAAAGCAATCTGATTTCTATAAGTAACATCGCCATGCCCAACATTCTTACATTACCATCTGTTGCCAGGTGGTTTAACT TTGTAAATCCTAACTATCCAGTTTGATGTTGTGAATGCTTCTTCTAAGTATTCAAGTTTGACATCCTTATTCCCTATCTCAACGCCTCTCGCTC GGTCATAACCAGGAGGTTTTCCATACTCTGTCGTCAGCTCCCCAAACCGATAGTAGCATAGCTTGTACATTAGACAATTCAACATCTTGGGAGC TGCTCCTTTGTCAACACGATATTCACCATTGACAAGATAATCAGGTTCCTTGATCACAGGGAAAACTCCACCTCCAATTCTCACCATCCACAAA AACTTGTTAATATCATCTGAAGAGTAGCCAGTAACACCTCCAAAAACAACCAACACATAGTCCACATCCAATGATCTCATTATATCATATGCTT CGTCCTCATAAGAGGACATAGCCCGCCCGACTGTAGCAATGTGTGTATTATTCCATGTGTTATTGTCTACAATAACAGTTCTGTTCCCCATGGC TGTAATTTGATAACCATAATCCCACCAAGACATTACTTTAGCATCTTGAGGAGTATTTTGTCTAAGCCAGAAGTATGCTTCACGGTAATCATCA AATATGACCCGTTGACCATGGGCCCCACGTGCAGCCAAGACAATTGAAGGAGATGAGTATGCCTCTGATGTGACCCATGTACAGTGAATAGCAT ATCTGCTTAGTAAATAGAAAGCACCAAAGAGTAACACCGTAGCACCATTTTTCAGGAAAGGAATAGATTGGTCAAGCGAAGCTTGTTGCTTAGA TAATCCCTTTGTGCTACTGGTTCCTTTGGCAGAAACAGTTTGACCAGTCTTTCCCCTGATCGCTTGGGTCAAGTTCTTTATTGTAGCAGAGACT GCAATAGCACTAATAAGGCATACGGCAGGTGTTGCAACAAGAATCAACCGAACCATCACACCAGCGAAATACATACTCGTGAGACCGTACATTA CAATGAAAATAGTGGCATCTGATAGTCGTTTGAAGCAGAAATATAAACCCGCGGGAAAGAGGAAAAGCAGGATATGAAAATCAAACATGAAAGA TGACCATGCCGTAGGCTGATGCTCAGAGACCGAAGCTATAATTGGGATATGATCTTTTGCATACGTCGGGTCCAGTAAAGAGTAAAATCGCCCT GTCCATGGTGAGATATAACCAGAAGCTGTACCCAATCCCAAAGCAATAGCACCCACAGCTACTGCAGATGTTACACTAATCCTCAAAAAGGCTT GAAACTTGGTTGTATCGTTTAACATGTGCTTTACCCAAACCAGGAAGTAAAATACCTGAATCAAGAAGAACACTCCCATAGCAGCCATATGTTC ACCCGACTGAACATGTTGAAACCCAACAAACCTAATCTGCATAGCGAGCAACATCCCCACAATATACATACAATTATACGCCACATACAATCTC ATCGAATACCTCCCAGTAATCAGCAACACCAACACATACAACGGAATCAAATTAATAATAAACACATAACCACCCCACGCCGAAACCATATAAA AATACCCAAAAGCCGACGCTAAACTCCACGCCAACGACCCCGTATTAACCGCCTTAACAAACAAATAAAAAGTCAACAACAACGCAAAAATCGC AACACCCTCATTATCATAACTCCCTGCAACCGACCTCGATATATAACCAGGACATATAGCAATCAAAATAGCAGCCACTAAACCCGCCCCAGAA TCCCACACCTCTTTCCCGAAGAAATACGCCACAATTGTCGTATTACTCGCGAAAAAAGGCGCAGTCAAGACACAAACTTCGCGAATATGAACCG CAAACCTTAAAAACTTCAAACCCCAATAAATAACAGCAGCAGTAACCATAAGACCAGGATACAAAGTCCCACCTATAATTCTACCTAAAGGGTA CCAGCTTTCGGAATCGAACCAGTTCCAAAACTCGTAAAACCCGTTTTCGGTTAAGTACAAGGTGGTTCTGTAGTTAAAATAAGGGTCAAATTCA TGTATCATAGACTCATAACGTAAGACACTAAACAAACGAGTAATAAAAGCTAAAATGTAGACAAGTAACAGGATTGTGATACGGATCAAGAGTT CTTGCTGTTTGGTTTTGAGTTTGAAGGTTTTTAAGGAAAAAGGTGGTGTTTTTAAGGCTGTGGTTGGATCTGGTTGGTGGGTTTTGTTGGTGTC TGGTTTTCCGACCATGGTTAATGATGATGATGATGGAGATCAATGGTGGTTGTTAGGGTTTGATGGAAATGACAGAATAGAGTGGACTGAAGAG A |
Primers for UN91748 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TGTTTTTAAGGCTGTGGTTGG | 60.018 | 21 | TCTGTCATTTCCATCAAACCC | 59.782 | 21 | 124 | 2209 | 2332 |
2 | TGTGGTTGGATCTGGTTGGT | 61.238 | 20 | TCTGTCATTTCCATCAAACCC | 59.782 | 21 | 112 | 2221 | 2332 |
3 | GTGGTTGGATCTGGTTGGTG | 61.238 | 20 | TCTGTCATTTCCATCAAACCC | 59.782 | 21 | 111 | 2222 | 2332 |