Simple sequence repeat (SSR)
>UN00075 TTAAGCCTACTAAAACAATTATCGAAAGTTACCAAATATAAAGTGTAACTACCAAAGCTTTTGGCCTAGCAATGTATGACTATATCATCCTCCA CTTCTTCTAAGTTCTTTGAGCCATCTTTTTCACCTCATTCATAATAAAATCATCCTCCTCTTCTTCTTCTCCTCTAGTAGTAGTAGTAGTATTA GCATCTGTGGATGATTTCTCCAAATCATTATCAATATTAAACCATGCATGTACTTTTGTCAAACTATTATCATACAAGCAAACTACAAACTTAT ATCACTTCATTAGTATTTACTTCAACTTTTTTTTCCTTTTGTTCATCATTTCGTAATTTCTTGCAATGTAGCATACGACACCTCAAGCGAAAGA TTTGCAATACAACTATCAGATCGACTGAGTTTTATTGTATCCGTGCTCCTTAAAGGACTATTTGGCATAGACCTTAATGCTCTTGGTGAGTCCA AGCTTCGCAAAACAATCTGTCTCATAGCCGCGATTAGATGAATCGTGGGTTCAGTCATCTTATTCGGTGGCCTAGATTCCTTGCAAAAGTTCAT AAGACGAGCCATTGCCTCTTTGGTGCTAATTAGCTTTTTGCCTCGGGCAATTTCGTCTTTTATAGCCTCGCTACATAACCCGCATATCCATTTG CCATTGTATCGTTCTCGAATCTTGTATAAGTACTCGAATGTACACTCCTCCGTTAATCCGCAACATTCACACTTAGCAGATGTAGTTGACATCA GCAATATATATATGAGCAAAGAAACTTGATCAAGCTATGATATATCTTCAAACTCGAAACAAAATGAGTTTTCTTTTCTTTTTTTAATTTGGTA TGAACCTGAAAGGTAGAATGAACTTGTATAGAGATCTGATAAAATAGTGGCTTTGTTGAGAGGGAAAAGAAAGAA |
Primers for UN00075 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TTGAGCCATCTTTTTCACCTC | 59.302 | 21 | TTCGCTTGAGGTGTCGTATG | 59.864 | 20 | 264 | 110 | 373 |
2 | TGAGCCATCTTTTTCACCTCA | 60.76 | 21 | TTCGCTTGAGGTGTCGTATG | 59.864 | 20 | 263 | 111 | 373 |
3 | CAAAGCTTTTGGCCTAGCAA | 60.5 | 20 | GGAGAAATCATCCACAGATGC | 59.503 | 21 | 157 | 53 | 209 |