Simple sequence repeat (SSR)
>UN90970 CTTATAAAAAGTAAATAGATAAACAATATACATCTTCGAGACAGATTTGGGAAAACCCCATAGCAGCATGGTATTAGAGGGCAATGTACACTCT CACAACAGATCTTAAACAACAAATCGAATGTTCCACCTTAAGCTAAGGGTTGTACTAAATATCACAAGTAAAAACAACAACCTATCATAATCGT CACCTTATTGTTTGTGGGGTGCAAAAAATTAATCAGAAAAACCTTTTGTTTTTTTTAATTCGGATCAAGCATCTATGGCATCAACAGGAAGGGA AGTTGCCCTATGAAGAGGTTGAGCCCCATAACTTTCCTCTCTTTCTCCGTCATCTAGAGAAAAAGAAACAAAACGTGTTCCCGAAGCAAACGAT TTTAGTAAACGTTCTTCATCATCTTTGTATTGTTCTCTTAATGAGGATGATGACTTATGTCTCATATGCTGTTTTGGTTGTTTATCTCTGAGTT CCCTTAGCTCCATCTGATACTTGGCTTTGAGCCACCTCAATTCTTGTCTAATCTCGTTTTCGTAATCATCATCATCATCTTCAGTAGCCAGAGT TTCTTCCGATACCCCGGGAAACCTCACTCTTTCGACAGGTTCGTCTTCGGTACACGACTGATATTCACTGGTGCCTACTTCATGTTGACCTCCC CATATTTCCGAGTACTGTAATCCATCAGATTGGCTCGATACAACTGGTGCATCTTCAAATTGATAAGTTATTTCTTCAAAGCGGCCATGAATGG CACCGCAATGTTGTCTTGAACAGTGAAGCGTGTTCTTTGCTGCTATTGCGTTACTCGTTGCGGACAAATAGTTTATTCGAGATCCGTTGTTTAA TGCACAACTTTGACAGCTTTCATGACGAGGACTTTCATCTGATTGGCCTAAACCCTTTTTCCAATCTGGCACCAAGCAAGATATTTCTCCATCG ATCATGTCGGCTATCTTATGGACATCTTGATTGGTAATATCCAACTCGAACACCATTTCATTTGCAACACTAAATGCTGTGTCAGATTCGATGT CAAAAGGGAAGTAAATATTCCGTACACGCCCTTCTCGATCTGCAATCCTTAGCCTCAAGAAGATACCATCATCTTCTCCTCTCCTCCCCTTGAT AGAAATATCGATATCCTCAAGATGGTCTTCTTCTTGGGTTGTAAATAACTCAATTTCATTTGCTTCGGGTTCATAACCGATATAGTTTGAGTAG TTATCAGTTTGTGGACTTCCATTGGTAAAATGATTATTGTTCATGTGAGGTATTCCCTCAAACTCTCTCCAATAATCAATAGGCCTCATATCAT AACCATAATCATCAGGCTGGAGAAACGGGTCTTTAAGAAGCTCTTTTGCCGGAAGTCTAAGAGAAACTGTAACTAAACATTTCTCCACAAATTG TCGCACTTGAGGGTCCTTAACTTTGTAAAGAGCATCCGGCTTTTTCCCTGAAATAACTTTCTTGTATATCTGAGCAGGATGGGTGCATTCGCTG TAAGGATATTCAAAAGTGACCATTTCCAAAATGCACATTCCAAATGCATAAATGTCGACCAATTCGTTGTATTCCTCGGCATAAACCTCGGGAG CCATGAACTCTGGTGTTCCAACACAGCGGGCAGCATGAGATTTACGGAGGATAGCCGCAAGGCCTAAATCGCCAATTTTGACTTCGCCTTGATT GCCGTTAACAAAAATATTGTCACATTTAAGATCCCTATGGATGACAGGAGGATCATGGCTATGGAGATAAAGCAACCCCTTCAAAATCTGTCGA CACCAATGTTTGATAGCGCGTAAATTAACCCGCTTGTGTTTCTGCCTGTACTGCCTAAGGGTGCCAGAAGTGAACATCTCAGTGACGAAATTCA TGTTACGGTTGGCGGTATCGACCCAGGAAGTGTAGAATTTCATGATGTTGTTGTGTTTTAAGGTTTTTAAGAGATGGATTTCGCAGTAGAGCCT CTCGAGATCTTCGGGGCTTTGAAGGAAATCGTAAAGCTTGACCTGATTCCAGGCAACTTCGATCCCTTCGTACTCGTCGAAGCCTCGGTAGACT GTTTTGGAAGCTCCTTTGCCAAGAATCTCATTATACCTTCCATATCTGCCAGTGGGATCAACTTCAACAAACTCAGAATCAGAATCATCTGAAT CACCACCATTCATGATTCTTATGATTGTTGTTGTTGTTGTTGACTAGATCTATGTTTGTTAGATGATGATGATAAACTGTTTGTTTGTTTGTTT GACTAGAGTTGAATGACTGGATAGTTTAGTTACATGGATGGTGTCTGTGTTTCTTCTTTCTGTCCAACAAGATCCTCGCCACAAAACCACCAGG ATGGGATGTGATGGG |
Primers for UN90970 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | AGAAACAAAACGTGTTCCCG | 60.008 | 20 | CGTGTACCGAAGACGAACCT | 60.171 | 20 | 275 | 346 | 620 |
2 | AACAAAACGTGTTCCCGAAG | 60.008 | 20 | CGTGTACCGAAGACGAACCT | 60.171 | 20 | 272 | 349 | 620 |
3 | CCCGAAGCAAACGATTTTAG | 59.715 | 20 | CGTGTACCGAAGACGAACCT | 60.171 | 20 | 259 | 362 | 620 |