Simple sequence repeat (SSR)
>UN90518 CCCTCTCGATCATTATGCCCAATCAACTGCAAAATTCAAAATTTACTCATCAATGAGGACATATGTACAGGAATTAGCTCCATTGGCGCACCGG ACTGCAATTTTCTAACTAGTTTTCAAGAACTCACATTTAGCTGGAAAATCAATTCATGCAGAATCAGCTATGACAGAAGCCAATATTTGGTGCG TCTTCAATTCTTGAGCTTTTCTGCGGTTGGATTCCATGACGATAAGTAGTGCTGTGATGTCAGCAGGGCTAACCCCACCAACCCTGCTTGCTTG ACCAATAGTTTGTGGCCTCACCTTTGATAGCTTTTCACGTGCTTCATGCGATAAGGTATTCATAGAATGATAATCTAAGTCCGCAGGAAGGGGT TTATGTTGTCGATGAACCATCTGTTGCAATTGGCTGTGTTGACGTGCAATCAAGCCTTCGTACTTGATATCAATCTCAATGCATTCTTTTTCGA TCCTTGACATGTCATCATTTCCAAAACCATGCTTGTCGAACAGCTTGTATTCGATATGTGGCTTTTTAAGAAGTCCTTCGAGTGTTGAGTGATC CTTGACTGGCTGACCCGACAGAAGACTAACCTCTTTAAATAATTCTTCATTTGTAACCCGTACACTCTTCAGTCTCTTTTTCTCCTCTGAGATT CGAGCTTGTTTGTCCTGATATAATGTCCATCTTTTGTCATTAATTAAACCAATTTCACGACCTAGAGGCGTGAGACGACTGTCAGCATTATCTG ATCGAAGAATCAACCGGTATTCTGAACGGCTTGTCAGCATACGATAAGGCTCTCGAAGATCTTTGGTGACCAGATCATCAATTAAAGTGCCTAT ATAACTGCTTTCCCTCTCAAGAACAATAAGGGATTTCCCCTCTGCATGCCTAGCAGCATTTATTCCAGAAATAAGTCCCTGAGCAGCAGCTTCT TCATAACCTGTTGTTCCATTGATTTGACCGGAGAAAAAGAGTCCTTGTATCTTCTTTGTCATAAGAGACCTTGAACACTGATGCGCAGGTAAGT AATCATACTCTACAGCATATGCCGGCCTCAACATTGAACAATTCTCCAATCCTGGTAATGTTCTCAACAGTGGTAACTGTAATCTTTCAGGTAA CCCAGTTGAGAAACCCTGCACATAAAGATCAGGTACGCTTCGACCTTCTGGTTCAAGGAATATTTGATGGGAGTCTTTATCTTGAAACCTCACA ATCTTGTCCTCAATTGAGGGGCAATATCGAGGTCCCTTGGCTTCCACCCATCCTCCATATGTGGGAGTCTCATGTAAATTGTCTTTTATCATTT GATGAGTGACTTGTGTTGTACGCGTGAGATAGCAACACATTTGTTCCCGTTCGATGTGGTATTCAGGATCAAAACTAAACCAGTTCACCTCTTC ATCTCCGTGTTGAGGCTCCAACAGAGAAAAATCTACAGTGCGTGAGTCAACGCGTGCAGGTGTCCCCGTTTTTAGCCGATCAGTTTCAAATCCA AGTGATTGCAAGTTTTCAGTGAGACCATGCGAAGCTGATTCGCCAGCTCTACCCGCAGGCATAGAAGTTCTTCCAACCCAAACTTTTCCACTCA TGAAAGTGCCAGTAGTAAGTACTACAGATTGTGAATAAAAGTCCATCCCAAAAAATGTGCGAACACCTTTGACATCATCATTTGTTCCTAGTAA GAGATCTGTTACCATCGCCTCCCTTATAGACAAGTTGGGAGTGCTCTCTACAATCTTTTTCATCTCAATAGCATATTCTCTCTTATCAGTCTGA GCACGCAATGCTCTAACCGCAGGGCCTCTAGAGATGTTAAGAACACGCTTTTGTAGATAACACCTATCAGCCATCTTTCCAATTTCACCACCTA ATGCATCCACTTCATGTACTAGTTGAGACTTTGCAGGTCCACCAACTGCCGGGTTGCAGGGCTGCCATGCGATTCGGTCAATATTCAGTGTTAA AAGAAGAGTTTTTGCCCCTAAACGAGCCGAGGCAAGAGCAGCTTCACAGCCAGCATGGCCACCTCCTACCACTATCACATCATATGTTTCATCA CCCGTTGCAGCATTATTCCAATCTGATGAGGTGGAAGCAGTTACTGAATAACTACGTGTAGGGAAGAAGGTGAAGGAGACACGTGGCTTGCACG TGCGAGTAAACTTGAGTGATGATGATGATGATGAGCGGTGTGGGCGGAGGTAAGGGAAGAGTGACACGTGGCGTGGGAGTCGAGTGAAGTGGAG TAGTGACATGGCGGCGGTTGCCATGTTTGGTGG |
Primers for UN90518 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | ATCACCCGTTGCAGCATTAT | 60.361 | 20 | CCACGTGTCACTCTTCCCTT | 60.151 | 20 | 169 | 2065 | 2233 |
2 | ATCACCCGTTGCAGCATTAT | 60.361 | 20 | CTCCACTTCACTCGACTCCC | 59.835 | 20 | 192 | 2065 | 2256 |
3 | TTGCACGTGCGAGTAAACTT | 59.536 | 20 | CTCCACTTCACTCGACTCCC | 59.835 | 20 | 101 | 2156 | 2256 |