Simple sequence repeat (SSR)
>UN90352 CTCGCGTTGCATAGTCTCTGCTAAGGAATTGTAGGAGAAAGCTTAGAATATGAGGACTCGAACAAGACTGATCCTCAATAAGCTTAAAGAGGAT CCCTTGGTGGAAAAATGAGTAGTGATCATACCAATACTACTTGAGTATGTCCTAGTAACCATTAGCTTTAATTTCTGCTCGTTTTAAACCTCTT CAAATCTGTGTCGCTCTTCTCCTCCCTTGTGCTTGCAAGTCGCGAACGTGTCAGGTTTTCATCTATGACCGGAGCTTCGTTTTTCTTAAAAATG GGTGTTGAGGAATCGCGTCTACTGGTATTTGCTCTTTTTCCAAGGTCAATTTGTACAGAGATATTGGCTTCTGATAAGTCCACACCCGAGCTCT GTAGCGCTTGTGTTAGCGTACTCAATAACCCTTGAGAGTAGATGGTTGATATACTAATTGTGCCACTTTCAATCGTTAGGTCCTGGTCTTTTGA TTTATCACCAGCAACGGTGCAGTCAGTTGTGCATGATCTGCTTTGCCATAATTGGGATGGTGTGTTTGCTGTATCAGATGGCAGAGTTGAAGGA GGCGGTGCAGCGACACTCGTGCTTCCACAACCAGGAGAATACACGTTTGGTTGCAAGGGTGATGGGAAAGGAGATGCCAAATTGGTCAAACGAG GATGTTGACCAATGTCCTTCATGGTTTCGAGGGAACTTAAATCAGAATCTAGTATGTTTTGGTGATCTTTTTTGGGTAGGTTTAAGGCAACACT GTGCTTGTTCTCGTTCAGTTTTGAAGCATATGGCAATGCTGAGCCAGACACGCCGTTTTGGACTCGTGGTTGATCAATGAACCCTTCTGTTGGT CTTTGGTTATTGTTCCATGGGGTCATTGCAGGTTGTTCATTAGTCCATCCCCGGCATGATTCCTCGAACTTGTGTACCTTCTCTTGTAGAAACT GAATGTATTCAATAACCTCTAGTAAAAACGAGGCCTTATCTCTCTTTTGATCACCGTGAGGGATGAGTTCTCTTAACATTGAAAATCTGTCATT GATTTTGCTTCTTCTACGCTGCTCCGTTGCAGAATGCTTAGATCGCGGGGTGTTGGGCTTTTGATCATGATGTGCTGTGTCAACTTTAACAGAC AAAACACCTTTGTAGTGTGTGGATGGTTCTTTCTTGATAACAAACTCTTCTACTTCTTCATCCTCGTCTTCTTGCACACTCTTGGCAGACTTTA ACATATCAACAAAACTCGGATTCTTCTGGGCTGATGATGGACGAGAAGATGATAGAGAACTGATGGTTGCGGTTGGATGGTTATGGGCAGATGA CGACTGTGATGGGCGCTCCATAGATGTCATCCATGGCATTCCTCCCATCTTCATGCCCCCTTCTCTAATCACATGCCGATTTCCAGCAATATTC TCCTTCCCTGTCTTTCCCTTCTTGACTGCAGATTCTTCCCAAAGTGAAAAGCCACTTCCGGTGTACGAACTACAATTTGAATTTTCATCGTTTT TATCACTACCACTAGATTGTGCACCCGTGATCACGACCCCAACCCCTTCAGGCTTTGGCATCCTTTGGCTTTGATTGATTACAGAAATGTGACT AATACTATATGTCCCTATCCCACCTGGAAGAATATGCTCCACTGTAGTTGGGGGAGCTGGTGGAAGGGACTTTCCGATGGATGATTCTTCGACT TTATTTGCTTCTTTAGCAACATTTTTCCCGACCCGTTCCAATGGTTGCAAGAAGTCATGAGTTTCGAGGTAGCTACCTGAAGGAGTAGTAGTAG CAGCAGACGGATCTTGCTGAGCAGGTGAATAAAGTGAAAGAAAATCATGCGTTGGTTTTCTACCTTGAGTACCTAACAAACGTTGTTGAGGATG CTCCATCTAGATGTACAATTCGATCCGCTATAAATTAGGCTAACTAAATCTTAAAATTCTCGAAACCGAAAATGTCACTGAGATTCAGATCTAG CAACGTCCATGTAGATGACGTGAATTCGATTGCGCCTCGAATTTTCTGAGGCGCATTCACTGCGTAATTCTTGATCAGAATCTTTATCTTAAAC CGATCTGAATTTGCGCAATTTCGCGTAATTCAGTAGTTATAAAACCTTTGAAGATAGATTTATAAAACCACACGACATCAACCTTGGATATATA ACTCTTGTTGTTCCAAAAAATATAATGTGTGTGTGTTTTTGAGGGTGTAAAAAGGGGGTGTTGTGTGTGTGTGATGAAAGATAGGATTGTCAGT CCAGATCTCCAACTTAACACAAAACACTTTCTCTCTCTGAAACAAG |
Primers for UN90352 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GAATTTTCTGAGGCGCATTC | 59.791 | 20 | AAGTTGGAGATCTGGACTGACAA | 60.16 | 23 | 259 | 2013 | 2271 |
2 | ATTTTCTGAGGCGCATTCAC | 60.221 | 20 | AAGTTGGAGATCTGGACTGACAA | 60.16 | 23 | 257 | 2015 | 2271 |
3 | GAATTTTCTGAGGCGCATTC | 59.791 | 20 | AGTTGGAGATCTGGACTGACAA | 58.794 | 22 | 258 | 2013 | 2270 |