Simple sequence repeat (SSR)
| >UN89996 AAACAAACATCCGCCTTATGGTTTCTTTTAAACTCTTGTTCTAGCCATATGCCTTATTAAGAGTCTGTATAAATTAAACTTGCTAAAACACGAA AAAAGTTGCAAAACAAAACTGTCGTCTACCGGAAAAAAGAAAGAAAAAACAAACATCTCCAAAAAAAAGCATCCAACTTTTCTATCACTCAGCA GAGTATCCCCTCTCTCTCCATAAACAAAGGATTTTTCTAGCACCCTTTGTGAAATCACGAGCTCCATCAAGTTTAAGTTTAAGGTCTATCAACG CTTTCCAGCGGTTTTCTTAGCTGATGGCAGAGGGTTATCTTCCTCATCTGACTGGATGTCACCATACTCCCACATACCATACCTTTTGGTGCGG GCTTCTGCTTGGTACTTTTCTAATTCGTCAAGCACTACTTGTTTGTCTTTAGGCTCCCATCTCCTACGTTTCTCCAACCTCGCCACTCCCGCCT TAAGCATGTTGGCATTGATACTGGTATCAGCTTTCTCATCGATCAAAGTCACCAAAAGAACATTTCCAGTTCCCTGACCTTTGACTTTTCCTCC AGAAGTATCCCTTTCCTCAATCACCGCCTTAAATTCCTTTGGCTCCGCAAGTGTGCTTTCACTTAAATGCACAGCTGCTTCCTGACCATAATCC TCATCCAAAGATGGTACCTTTAAGTAAGCCAGTTGGCAAAGTTGAGCCAATCCAGGTGCAGATGATACAGATGGATCCGCAGGACGTAACTGAC TGTATGTAACAGTTTCTTGATTTCCATAATCAATGTAAAACACTTCAAAATTGTCTTTAGATGATTGAACGTCGCCACGTGGACCATTTACAAC CATAGCTCGGTTCCATGAGTTATCTGCCGTAAACTGAGCAAGAACGATATCACCCTTCTTTGGGTTAAATGCACCAATCACAGGTGCTTCTTTT ATGTTTAAAGAAGCAAGTTGCTGCTGAATTGCCGAAACTTTCTGATCCGCAACAGCTTGAACGTAGAACTTGCCTCCATCAAGAACTTCAGTTA CCACAGCCTTAAACTCTTCTTTCTGTTTTTTCTCAGTAGGAGTTGAACCATTAGTAACTTCCTCTCCTTCGACATAGTTTTCCCATATCTTTAA TTTCTGCCTCTTGGCAGACTGCTCAGCCTGAGCAAGAAGGTGAGCATCCGCAATCCTATCAGCACCAAACCCAGTCTGAAGCTTTGCAAGCCCA GCTTCCAAAAGGATGGCCCCGACATTAGTTCTTGATTCCCACAAAGATCCAATAAAGGTCCCTGTTCTATCAACTGTTTCTACTTCAATCTCCA CATCCCTCTGCATTATCTTGCGTCTCATAAGAGAGATTGCATCATTGGAGTAGGGCTCGTCACGACCCGGACATCTAACACCAGAAAGTGAAAA AGCAATGCTGCATGTTTCCTTGGGAACAAATAATTTAAACCTATGACCACTAAGAACATATTCAACAACAGCAGTCATCCTCCTGTTACGCTGC AAAAATGGGAGGAAATCTTTGGCTTTCTTGGCTGAGCCCGCCAAGAGATCTGTGACATGCATGCTTGGAGGATCTTTAGCAGAATGAATCCCCT TTCTTCCAGAAGTAGCACGGGATTCAGCTGCAAGAAGATTCTCATAGTGGTTTGATCTTTCCTCAAAGTCTCTATGTCTAATGACAGTACCAAA CCCACGAGCAATAATAAGCTCAGCAACATTCAAACCAGGCTGTTGAGTGGCTGCTGCAGCGGGGGTAGCAGTGGTAGAGTTGACATCTTCACTC CCCTTCCCTTCGGACAACAAAAAGACAGACCCGAATCCCATTACCCTTGAGTCTGCAGATCCAGCTGGCGCAGCAGATCCTTCAGCAACAGGCA CCTTTCGAGAGTACTCCATTGAAACTTGAACTTGACGGCCAATTAATCTTGTTCTTAGAAATTCCCTAGCTTCGCGGGCATAAGGAGCGGGTTT CTCTTCTCTTCGAGGATTTCCGAGTTTTGGACACCTGATACTTGAGAGATTGACTCGTCGCTCGGCTGCTGGACTGCCAAATGGTAGAGCATCA TCAGCAACAATTATGCAGTCCCCACTAACAACTTCAACAACCTTTCCAGTGAAATTGTCTGAAATAGCCTTTGAATTGGTAGCTGGGGGTAGAT AGTTTGTCCAAAGCCTCAACTTAGTCTTTTTCGCGTGAAGTTCTGCAGCCTTTAGCTTCCTCCTGGCTTCTTCTTCCATCATACTTGCACTCCA CTCGACATACTTTGCATATCCATTTTCGATAAGCTCCATTGCCAGATCCTTTGCTGATTCACCGTCAGAGTAGTACACAGAACCAATCAGATTA CTAAACTTGTCAACACCCTCAAGAACAATGCGAACATCTCTGTTTAGCACACGAATCTCGGTAAAATGTTTAGCTTCTCTCCCAAATGCATCAG GGGAAACTTCAGTAAAACCAGATGAGGCTGTAATTCTCTGAGCTGATGTCAAGGGTCCACGAGACTCTGCATTACTATCTCCATTTGGTTCATC TGATGGTACTTCAATTGGTAAAGCAGGTTCTTGTGTTGTCCTTCTTCCCATAGATGGTGCCTGGATTCCAGCAACAAAGACTTGTACAAACTGA AACTCAGGAAGCAGATAAACACGAAGTGAGCTTCCATCACGAACTTGCTCAACAATAGCCTCCATGGGTTTGCCTTTGTTTGAAGCTAAGAGGC CCATTGCATCCAAATTGCTGGGATCACCAACAGCAGATGGAGGGAGGTTCCTAATGGAAGCTTCAGCAGCGCCCGTGTTCCATACACCAACACC CTGTGTTTTGGCTTGTTCTCCAAGGTTTAGCAGTTCTGCATGCTCAGGAGGTGTCTCTCCTTTAGCCTCCTTAACCTTCGCCCAACCATGAGAG ACAACCTCTTTTCCAACATTAGTAGAACCCACGAAAACGCTGCAAAATTCTCGGGAGAAATTTGGGATGGTATATTCCGTTCTAAAAACGACAT CCTTTCCTATACATAACTTCCGTAGAAATTCTCTACTGTCCCATGCAAATGGTTCATCTTGACCACCTCTACGAGCCAATCTCGGCGCCGCAAG ATGAGCCAAAACAACAGTCTTTTCAGGCGGGATTTCGGCTTTCGTATTTCCCATAATCACCAAAGTGTCCCCGGACAAAACAGCCTTTACTTTT CCTCTCAACCATCCTGAAGTCGCTGCTGGTTGCGCCATCACTAATGATCTTAAATCACCTCAACACCAGATCAATCAATCAATCAATCACAATC AGATTCAATTCACCTTTTGATATGTCAATTTTATAACATAATTCAAAACCCTAATTTTTTTTTTT |
Primers for UN89996 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | AGTCTTTTCAGGCGGGATTT | 60.074 | 20 | TTGACATATCAAAAGGTGAATTGAA | 59.775 | 25 | 201 | 3118 | 3318 |
| 2 | CGGCTTTCGTATTTCCCATA | 59.922 | 20 | TTGACATATCAAAAGGTGAATTGAA | 59.775 | 25 | 181 | 3138 | 3318 |
| 3 | CTTGACCACCTCTACGAGCC | 59.867 | 20 | TTGACATATCAAAAGGTGAATTGAA | 59.775 | 25 | 253 | 3066 | 3318 |