Simple sequence repeat (SSR)
| >UN89557 TTTATGAAAACTAAATCTCCATTAACATTCATTAACTTTCTCCATGCATAAAAAGAAAAACCGGCAAAAGATAGCCTAGCAAAACACCTTTGTA CATAATGGCATGCTCCAGATATCACCTATGTACACCCCCATACCTATATATTTTAATGACAATAATAACGACCCATGCAGAATCATAATAACTC CAATTGCCCATAATTTCAAAACTTATATCATCAAAGACTTGCCTCCAATTTGCTTGTCGGGGAGTTGGATGCATCTTGACGCAACTTAGAATAA TAATTATTTGAACTCTTCTCAACTGCCATTAGTCCATAACCATAAGCAATGTATACCATACTCCCTATCCACCTACAAACATATACCTATATAT AGCAATAAAAACCCTATGCATGCTCAGGACTGGAAGATGGAATAGCCACTGTGTCCCCACCATCTACACCCTCTGCAACCGATGAATTGTCTTC TCCCCTTGAGTTCAGAGCTCCAAGATTCATACGTTGAACTTCCTCTTTAGTATAAATATATATCTTACGGACCATGACAACAAATTCCTGCCAT GGATCATCTCCAACAAGCATCATGTCACCCTCGTCATCGGTGTATACAACTAGCCAAGTCTTGGTGCGAGCTTTCAGTTCTCCATTGAATTCAA ACAACGTATCCAATTCATCAATTAATTCATCATAGTTGTTGAATTTAACAAGATCCACAGACCTACCAAGGGCAGTCCCCTGCTTGTGAACCTT TGTACAACTCCTTGTTGAAACTCCCTGTACTTTCGCTTGTGGTTGTGAATCTTGATATTGCTTCTCTTGCTCTTTACCAGCTAATAAATTACCC ATACCTTTCATTCCCATGGAAAGTTCAGACCTTTGATCAGATTCGTATGCGGGGAAGTTTTGTAATTGTATCCCTTGATGTGCATTTCCTGCTG AATCTGATGCAACCTTATTACCAGCAAGGGTCACACCAAATATTTTACAATTACCATCTTCTTGCTTCCTAATGTCATTTTGCTGAACCAGGGG TGATTTCGGGATTACTTCACTAGAATGAGAATTCATATGTAGATTAAACGAAAGTGGTGGAGGCATTAGCCATTTTCCATGTTGCTGCTCATTA CTCCTTTGATTCATTTGAGCAGGATACTCACCAAAAGGATTTTTAGTGTGGGGCACGTACTTGAGTGATAAATTTGACGGCATGGTCGACCATG GGTTTGACTGTATGCTGAATTTTCCTTCAGTTTGACTGTTGCGGGGCCCAAAACCTGATAATAGATCTGTAAAAGAGGCTTCCGAACCCCTGCC TAACGGTGACATTTTGTCCATCCCATAACGTTGAGACATTGGAGCAGAAACTGGGTCAATTTTGTCATCTTCTATGACTAAGGTTGGCCACTGA GTTTTTCTACCATTTGAATCTGACTCATTATTCTCGGCAAACGGGACTCTTGGTGTTGATAATTCTTGTCCTTGCAAGACCCTAGAAAATGCAC TTGAAGGTGACAGGTCTGCTGCCACGGGCCTTGATGAGCCTTCTCTTGTAAGAACAGAGGAATCAGGGGATGAAGTCAGCATGCTTGATCGAGG CCTTTTTTGTTTTTGGACTGGAAGTGGATTAACTGCCGGAGGGATGAGGGCTGGTTCTATCTTCCAAGGTGAAACTCTCTCGGGCCGAGGAATA GCCGATTGTTCATCCCATCTTACCCTTAGGCATCTCCATTTGGACTCTGGCCAATTTTGAGGATCGGACTCTTCAATCCCAACTATAGTCCCCG TAAATCTTTGCTCCGGGGCCTCTTCGCCTTCGAAACGCATCTTGAAGCGCATTCCAATAGAGTAGTTGTTTTTCATTGACTCCATATATTGATC AAAAGGAACAATAAACTCTGCAGGACTCGTCCTGGGTTTATAATACACGGTAAATATCGTGCCAGTTTGAACTGCATGCCACGCAGTTGCGAGT ACTCCTAGATGCATACTATGACTCGATATAACTGATGAAGGCACGTTTGCCTGCTGCCTCATTGCCCTTCGTACCCCCACACGAAGGTCTCCAT TTTCACCCCTAAGAAATATAAAAGCGTCGCCAGCAACGAGCCTTTTAGAGCTCACGAATACGCTCCACCCACTTTGAAGCAAGTGCCTTCGGGG TTGACCACGAAATATGTGCTTGAAAGTCCATCTGTTTCCATGCAAATCCTTAGCTCCAAGGTCTTGTGTTGGGGGTTGCTTTGACATGTCCAAT GCAGGAAGACATTCGTCAGCATGGCGTCTCAAAACAGAAAATCCACCATGAGTGCTTGTATCGGAAGCAGTCAACGTTTTGCAAAAAGAATGCA CGTGAAATCGCGGTTGGGCAGGTGGTGCAGGTTCCTTCTTAACAGCATTCTCATCTTGATTAGCTTCCGGCATCAAAGTTATTTGCGCGAACAC CTCATCTGTATCTTGTTCAGCCCTCAAATGCACATTCATCACACGACAAAGTATCTTTGACGGAAGATTATAAATCGGCATCTGTTGTTCCGCA ACCTGGTTGGTTGACGCCTCGACCTGCTCTATGTGCCCTTGAGGAAAATAGAACACGAGCTCATTCTCCTGAGGCACGGTGACGAGCGGACCAG CACAAGCTCGCCATAATTCCTTGTAAAGAGCCGCATCTGCATCAGCTCTAGCAGCAGCAGAAACTGCCGGAACAGGTCTCGAATCAGAACCTCC TCTACCATCATTCCTATCGCCAAAACCCGACAACCCTAAACCGTCCCTATCTCCTCCTCCTCCTCCTCTCATACTTGAAACCTCTGATGACGCC ATTTTAACGACTCTCAACACAGATCTTTAATTTAACAGCTCCTACTTCTTAATAAAACCCTAAAATTCAGCCTTAAACTACGATCAACTAATTT TCACCCATAATTTCCCATCAAATTAGCAAATTCAACACCAAAAACCTTAAAATTGCAACGAAACCCTAGAATTAGCGAATTCGACACTATAAAT CTTCCAAAAGCCGTAAATTCTCACCGAAGCCTTCAAACTTCCACCAACTAAGCGATTTTAACACTACAAACTCCCCGAAAACCGTAAAATCACA ACTAAACACTAAACCTAAACTCTCAACCACTAGATCAACACAATTTCACTTCAAATCACCAAATTCACCACTAAAAACCCTAATTTCACCACAA AACCCTAAAATTCACCAATCAAACCACAAGATCAACCTAATTCCATCATAAACACCTTCAAAACACATCAAAATCAACACTAAACCCTAAAATT CAACCTTCAAACCACAATTTCACTAATAAACTTAAGTTATACTAACAAACTGAAAAATCATTTTTCTCTC |
Primers for UN89557 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | ATTCCTTGTAAAGAGCCGCA | 59.845 | 20 | TCGTTAAAATGGCGTCATCA | 60.073 | 20 | 183 | 2648 | 2830 |
| 2 | TTCCTTGTAAAGAGCCGCAT | 59.845 | 20 | TCGTTAAAATGGCGTCATCA | 60.073 | 20 | 182 | 2649 | 2830 |
| 3 | TTCCTTGTAAAGAGCCGCAT | 59.845 | 20 | ATGGCGTCATCAGAGGTTTC | 60.081 | 20 | 174 | 2649 | 2822 |