Simple sequence repeat (SSR)
>UN89513 CTTAGAAAAACCTACTCAAAATCCTTATTTCATTCATTTATTCATACTGACAAGTAAAAAAAATAAGGCAAAAGTACCACCAACTTCAGTTCCG AGAGCAGTTGTTCGATAAAATCTACATGCAGCTCTGCTTATTTCAACTCTCAAGACACAAAATGCCCAAGGAAAACCCGAGCGATGCAGAAATA ATTATAATAGCTAAACACAAATGGATATTGAACAACACCCTTTGAATAATAAATAAATCAAACTACTAACAACAAACCCTTTCTTTCATGATGC ACCAGGAAACAGCACACCCTCCCCGAATGGCTCCACGCTGACTCTGACACTTAACACAGATGAAAATCGCCACTGGGTTTCATCTTCAAATAAC GTAATTACGTGTCCTGTGTTTACCGGGTTTCATCCTCAAGGTTGCGGAAACCAGCAGTAAGATCTTCGTATAGCTTCTTGAATTTTCCAGTAAG AACATCCTCGCCTTCAGCTGGGTCCTCAAACTTCTGAGACACTAATCGGTAAAATAGATCACCCAAACGATGTTTGATGAGTGAGTAAGTAATC TTCTGGCCATCCATGCCAGCTCCTCTTTCCACAGACTGGTTGGCTAGATTGTAGAAATGGATAATATTACGCATCATCCATACAGACTTGTAGA AGGGGCAGTACTTATCATATGGTGTAAATGCATTTTGAGCAAGATAGTCTTCCCTCAAAAGTTTTGCAGTTTCTAAGGTAATCTTATCTGATTC AGCCAAAGCATCTTTACCCACAAGCTGGACAATTTCATTAAGATCATCTTCTCTCTGGAGCACCTCACGAGCCTTTGTCCTAATGTCGATGAAA TCTGAATCAAACTTCTCATAGAAGGATTCTAGAGCCGTTGAGTACTTTGAGTAGGAGATAAGCCAGTTTACAGATGGAAAATGCTTCCTCTGGG CAAGCTTCTTATCTAAACCCCAGAAAACCTGAACAATACTGAGGGTAGCAGATGTAACAGGATCTGAGAAATCTCCACCAGGAGGAGAAACAGC ACCAACAATTGTGACACTACCATCACGTTCTGGTCCACCAAGACACTTTACTTTACCAGCACGTTCATAGAAGGATGCCAAACGTGCTGCCAAA TATGCAGGATAACCACTATCTGCGGGCATTTCTGCCAGACGACCAGAAATTTCACGCAATGCTTCTGCCCAACGTGAGGTGGAGTCTGCCATCA TACTGACATTGTAACCCATATCTCTGAAGTATTCAGCAATGGTAATTCCTGTATAGATTGAAGCCTCACGAGCAGCCACAGGCATGTTAGAAGT GTTGGCCACAAGTGTTGTACGCTTCATGACAGATTCTTCACGTCCGTCAGGCAATGTCATTGTCAATTGAGGGAAATCCATAAGAACTTCTGCC ATTTCATTTCCTCTTTCTCCGCAACCAACATAAACAACAGTGTCCGAATTTGAGTACTTAGATAGAGCTTGACTAATAACGGTTTTACCACAGC CAAAAGCACCAGGAATGGCACATGTCCCACCAAGCACAGAGGGGAAAAGGGCATCAAGAACACGCTGTCCAGTAAGAAGAGGAGTATCAGCAGC AAGCTTTGATGCAACAGGCCTAGGAGTACGTACGGGCCAAGTCTGAAGCATGGTAAATTGCTTTTTGACACCTTGAAATTCAAGCTCCAAGACA GTGTCCTTTAATGAGTATTGACCAGCTGGTGCAACATATGTTACTTTTCCCATGGCATCAGGAGGTAGAGCAATGCGGTGTTCCACTAAACTGT TCTCAAAAACAGTAGCATATAGATCTCCACCTGTGATAGTATCTCCCTCGCCTATTTTCTTTGGCTGGAATTCCCAAAGTATATCCTTGTCAAG AGCTGGGACAGATACACCACGGGGAATGTACACATCCTGTGATATTCTTGCGATAGTCTTCAAAGGCCTCTGGATACCATCAAAAATGTTCCCC AAAATTCCAGGGCCCAACTCCACGGATAGAGGCTTGTGTGTTCGGAGAACCGGATCATTCACCATCAGCCCAGCTGTTTCTTCATAAACTTGGA TGGTAGCAGAATCTCCTTCCAAACGGATAATCTCCCCAATAAGGTTGTCATGTCCAACACGAACAAGTTCGTACATAGCAGCCCCGTTCATTCC ATCTGCAATGACGACGGGCCCTGATACCTTACGGACGTAACCGCACTCGCTCTCCTTCTCGGAGTCTTCGAACGTCGTCAATCGAGCACCGTAT GCAGACGGCATGATTGTTATTATTAGATCGGTATGAACACGATGATGATGATGATTGGTGGTTCAGAAATGGTTATTATTACAGAGACGTGTAT ATAATAATAGTGATGAGGAAGAAAAAATACAATCACAATCAGTTGTG |
Primers for UN89513 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TACCTTACGGACGTAACCGC | 60.018 | 20 | CACAACTGATTGTGATTGTATTTTT | 57.29 | 25 | 211 | 2187 | 2397 |
2 | GTATGCAGACGGCATGATTG | 60.104 | 20 | CACAACTGATTGTGATTGTATTTTT | 57.29 | 25 | 145 | 2253 | 2397 |
3 | TATGCAGACGGCATGATTGT | 60.104 | 20 | CACAACTGATTGTGATTGTATTTTT | 57.29 | 25 | 144 | 2254 | 2397 |