Simple sequence repeat (SSR)
>UN87041 TTTTTGAAATGAAAGTGTGATAACTGTATTAAAATCTACACGGTAAACACATTATACAAATGACGAACGAGGAAAACAACCACAGATTTCAAGC TTATAGCAAATTTAAAATTTGTACATGCATCTTAAACTACTAAACAACTAAAAGTTTCATCATTATAGATTTAGAGCCACACTTTAAGCTCACT AGCCAACCTTGGTTTGTTAAGTGCAGGCATGACCTAAGCCCATCATCGGGGATGATGACCTAGTCCAAAACTCGCATCAGATTGCTGCTGCTGA GACTGTGTCAATTGTTGGTGTTCATGTTCACGAGGATTATAGAACGTTAACCCAGACTGTTGAGAAGGATACTGCATGTATAGTGTTTGATTCG GACTATATAATGGAGTCACCATTGTCTCCTGTGGTCTGTAGCCAATACCTGCTGGCGAGGATGGTGCAACCCATTGTCCAGGTAAATGTTGAGC AAGTGTGTGAGGTTGGTGTTCGGAAGAGATAGATTGGGCCCTATGAGCTGAACCAAGTTGCGGAAATTCAGTGTTGTAGGTTATGACAGGTGCA TACATTGGTTGAACAGGATATGAGCCACCATTAAATCCAAAGCCTGGATCAAATCGTTGTGCATATCTGTCATAGCTCCTATCATAATCAGGAT CATTTCGCTCAACTTCACGGTCACGAAAGATAGCCACTCTACCATTATTACTATTAGACCTACCAATTGGCTCCTCTATCCTAACTCTACCTGA TCTACTACCACCTGTAGAGGAATCAACCGAACCCCTGCCACTATTCACATCCACTCTCGTTGAAGACGAAACTTCTTCAGCCTTTGATGCCCCT ACTGAACTACGCTGGACCACTTCTTGGATCCTTTGATCACTCTCTTGTTTCGCACTAGAGCTAGAATTAGGGCTGAATATTCTTGCACGTGCTC GATTATATTCTTCTTTTCTCTCCTCAACACTTTTCAAGCTATTGCTCCTCTGTGAATTCGAATTTCCACCAACAAGTTGTGATCTTCTATTTGG TCTTTGCTTAATAGCAACTTTGACATTACTGTTTCCAGAATCATCACTTGGTAGTTTTATAGGGATATCAGCCAAACGTATCAGAGGAAGACGG CATTCAGAAGTCTTGAAAACAATAATTCGGGAACCAGAACCGTCCGGGAGGTTATTGTCTAGTAAAACCGTGGATTGAAGAGAATAGTGTTGAG CCACACGATGTGCTGCTAAACGCAGATAAGAAGTAGGAAGCTGCTGAAACTCCATTTGTTGCTGTGATGGATCTCTAACAAACTTCTCTACATC CTGCTCAATCCGTAACACTGAAAGACGTTCACGGGGGTTTTGCAAAGCTTCGCGTAAAAACTGATCAACAGAAGAATTGACAATCTCCTCTTCA GAAGAAGACAAATCAGGCGATGAGGAGCTCTTATTATTATTATTACTTTCGAGTTTCGATGATGATGATGACGTCATCATCAGCCTGCTCATTG CTGCGTCCACGTCAGCAACCTCCCATGACTCCGGCGGACCACCGTCTTCTACTGATCCGGCCATGGCTGTCACTTGTGGTTATGGTGACGTCAT CAGGGTGGAAATGAAGTTAGGGTTTGATCGGAGATTGGATTGGATATTTGGATTAGACT |
Primers for UN87041 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GCAAAGCTTCGCGTAAAAAC | 60.027 | 20 | AGTCATGGGAGGTTGCTGAC | 60.12 | 20 | 177 | 1358 | 1534 |
2 | GCAAAGCTTCGCGTAAAAAC | 60.027 | 20 | TGGCCGGATCAGTAGAAGAC | 60.218 | 20 | 210 | 1358 | 1567 |
3 | AGGAAGCTGCTGAAACTCCA | 60.134 | 20 | AGTCATGGGAGGTTGCTGAC | 60.12 | 20 | 278 | 1257 | 1534 |