Simple sequence repeat (SSR)
>UN86917 TGGCTGAACAGCTTGGTTTCTACTCTAACCAAGTTTCTGTATTACATTCAAGCCCACAGATACAACATAAGTAAGAAACTGTAGCTACAAAAGT TTCATTTTCTAAACCTCACTAAATATAGCACTGAGAACACGGACTGCACAAGAGTACAACTTCTACCACTAGAACCTTCTGGACAATATCTGCA TCTGTTAAACGAGCAACACCACTCTACATGTCTGGTTGCTCAAATGGCACTCTCACGAACAATTGACCGTGCAGGGTTACTACAGCCGAAGTTT GATGAGGATCAATCCTAGACGGCAAGCTCACGATCTTTTTGAAAGGAGAAACACCCCACGGATTGTCAAGCTGCTCTGGTTGACCGGATATGAC CAAGCGACCAGCTGCATCAGATTGTACTCGCACCTCTTCACGCAAAAGCCCAGGAACCAAAGCATACACCTCAAAGCAATCCTTAGTTCTCTGA ACATTGATCGTCACCCAGTCAGCAGGAGGACCAACATCGACAACTCCATTGTCTGATTGTGGTCTTGAAGCTTTCATGTGCGCAACTTTGGCAG CATGCTCAACTGAAGATGGATGTTTACGCTTCAGCAAACCAATGCCTTGCTTTGCTCGCTTCATTGTTGAACCGTAAGTCTTATCCTTGCTGAT TGGATCCCCAACCTCACCATTACCAAGAAGACGAGAATGCCAACCCTGCATAGCTCGAGCTGCTGCATCTCGCCTGGCCCTTCCTGGTCCAGGT GTTTGACTTAAACTAGTCTGTTTTCCACTAGAAACGGGTCCTGCAGAATACGAATCATTGAATGGCAGCTCCCCGAGGCTCATCATGTATTTCT CATATTCAAGCAATGACTTCTCGTAGAAGCACCGAAATGTCCATGAGACAGTAGTACATGTCTTTGGTGGTCTAAATGCTTCTCCCACTGTTCG CCATGTTTTCAATGAGGTAACATGTTCGTAGCCACCGAGCCTGACGACCGACCTAAACAACTTTAACAAGTTCAACATCTCTCCATAAAACTTA GGAGGCCTAAAGTCCAAACCCCTCTCCCTATGAAAAACCTCAAGCTCTTTCATAAACATCATTTGTTCCTCTTCACTTCCACTTTCGTACCCGA TATCCGAATAGTTGAGAAACGAATACTTTTGACCCGGATCTTCTTCTTCCTCCTCCATCTTTGGAACTGTCATTATCCCACCACCACCTTCGTA CCTGTCACTCTCTGTTGACGGTGACGGTGACGGTGACGGGTGGTAATCTTCTCCGTTACCGTTAGGGTTTTCTTGTTCTTCTGATGCCATTTTT TTGTGTTTGGGTGTGTTTGTTAATGTTAATGTTGTTGTTGGTGGAGCTCAGTTGTTGTGTGACATAATAAGGTTTGTTTGAGGAACAGTAGTAA GATGTATATCTTGTTGTTGTTGTTGTTGAGGATGGAGCGGTGTTTTTAACATTGTTGTTGGATGCTC |
Primers for UN86917 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TCATTATCCCACCACCACCT | 60.05 | 20 | CAATGTTAAAAACACCGCTCC | 59.505 | 21 | 267 | 1198 | 1464 |
2 | TCATTATCCCACCACCACCT | 60.05 | 20 | AATGTTAAAAACACCGCTCCA | 59.505 | 21 | 266 | 1198 | 1463 |
3 | GTCATTATCCCACCACCACC | 59.91 | 20 | AATGTTAAAAACACCGCTCCA | 59.505 | 21 | 267 | 1197 | 1463 |