Simple sequence repeat (SSR)
| >UN05049 CACGCCCACAATCTAGCACCCCGATTTGTTCCTCATCATCATAATTGCTCTGCATATGAATCAGTGCCTTCTGTCTCTTTAGATTCTGAATTAA CATCACCCCCAGGTTCATCATGCCTGTTAGTCATACTTGAAAGCATAATTCCTGATGCATTCATGGCAGAATAATCTGATTTGGTAGACATTGC ATCTTCTGCTTCTATTTCAACCCATTGCCCGGACTCGTGTTTCTGCTTCCACAAATCCATGAACCTCAAGCAAGCACTCCCGTTCTGTTACAAC TTCGGTTCCTTGAATTCTGTTAAGGCGTGCATGTTTCTTGTTCACTGCCTTTTGATCACGAACGGCAGTTTTCTCAAAGCAGCAGGAAGCTGGT TGTCAAAGACTCCATAAATTCGGTCACCTCCAGCCCGCCCTCCATCTAGATGCTCTTTGAATATCTTGTCAAAAGCACGACAGAGTTCCAAAAT GGTGTACAATTTAGCCCCTTCATCAACTGCAATTGGCCTCCCAAGACGATCCAACTCTGCTTCCATTTCTTCAATACCTTTGTTTATTAAGGCA ATGATACCTGGTATTTTGGCTTTGATTACAGATTCCAGATGCTGGGAGAGAAGTTTTGCGAGATATACAGAACCCATTTTACTAGCCAAGTGTC CATAGTCAGGACTGGTATAAAAGTACTCCTCCTCCCTCCGCCTTGCATACATCATATCAGTATTTTTCATAATATCAGCTTGAGATCTATTCAC AATCCCCACCCATGGATGTTGCAGTCGATAAGCTCTGCCTTCAAGGACATCTAATGCGTTAGTTCCTTTGTCCATCAGATCAAGCTTGGTCAGC ACACCAAAGGTCCTTTCACCTGTTGGATCCACCTCCTTAGCAAGTTTAATAGCATCCGATGTTGCAATATCTTGGTTGGCAGGTGATATTGCTA GTATTATAGAGTTGGGCTTCTCAACATAAGCTCGAACCATCTTTTCTATGTCTTCCACAATGGTTTCAGGTTGTCCCTCAACAGCAACTTTTGT CAGTCCAGGTAGATCGATTAAAGTTAAGTTGACAACTCTAGGGGAATATATGCTGAGATGAATTGGAATTGGAGATATTTGTTTTGACTTCCCA GTGATTCTGTCTGTTTCATCTTGAATCTCCTGACGTACCAAAGAGAAATCAGTAAACCGCCTCCGTTGCAGATGCCCAAATTCAGCATACTCTT CTCCGCCATCCGTCTTATGCAACTGCAACACCAATGGTCGCCTTGTGACAATCCCAGATCCTCTAGGAAGAAAATCTCTCCCGACAATGCTCTC TAAAACCGAAGACTTCCCAGAACTCTGACCGCCAACAACGGCAACAGAAGGAAGAGCGTCCCAAAGAGAGGAAAAAGTAGAGTCATCGCCGCCG TGATCACCTAAAGCCGTACAAGCTCTTTGTATACGGTTTACTAATCCGATCAAGCTCTCCATGGTCGCCATAACTAATTCTTTTAAGATCTGTA CGTATATGTGTTGTTATGGAGGGGATTGTAGAGAGAGAAAATCGTTGGATTCTAGAGAGAGAGAGAATGAAGAGTGTTTGAATTGAATTGGTCG TCGA |
Primers for UN05049 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | GCAACAGAAGGAAGAGCGTC | 60.142 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 244 | 1357 | 1600 |
| 2 | ACAACGGCAACAGAAGGAAG | 60.291 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 250 | 1351 | 1600 |
| 3 | CTCTCCATGGTCGCCATAAC | 60.483 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 136 | 1465 | 1600 |