Simple sequence repeat (SSR)
>UN05048 TCACAGAATCATGATTTACAAAACAAAAACAATCATGGATAACATAAATCCAAAGGGAAAAACCTGAAGAAAAAAAAATCCGACCCGAAAAAGT ACGTAGTTGTACTAGACTGTGCATACCCTACCCGGGATTTCTGGATCCGCCACTGTTGTGACCTTAAGTGTGTCAGACACCATACTGATATAAG ACGATACATTTGAGCCAATTCTCCTAAAATGTGCATCTCCATAGCGATCCCCTAATGGGTCAGTCGGGTTTCCACGTTCTGCAGATGGGATACC ACGATCTGAAGGTGGGTTTCTGCGATCAGCAGATACAGCTCTGCGGTCTGTAGCAGGTGAAGGAGCGGGCCCATTCTCAAACTCCAGAGGTAGT TTTCTAAAGAAATCTACTGTCAGGTAAGATGACTCCATGTCCACCAATCTGATAACGGTTTTCTTACTTTCCGTACGGAATTTTTCCAATGCTT CAGTAGCAGCAGCAGCAAGAGTAGCTTGAAGTGATGGAAACCGCCTCAACTCCTTAGTTTCTCCAATTGACTTCCTGACAAGTTCTTTAAGAAC AAAATGCACAGCGTCTACGGAAGCTTCAGCTGGTCCCCTAAAATAACTCAATGACCCCTCAATAAGGCGTCGATAACCTTGTTCTGGAGCAATC AAATGAGGCTGATATCCATCTGACTCTGAAACAATTTTCTTCACATTTGGCAGGGAAAGATGCCTATCAAACGGAAGTTTTCTCAAAGCAGCAG GAAGCTGGTTGTCAAAGACTCCATAAATTCGGTCACCTCCAGCCCGCCCTCCATCTAGATGCTCTTTGAATATCTTGTCAAAAGCACGACAGAG TTCCAAAATGGTGTACAATTTAGCCCCTTCATCAACTGCAATTGGCCTCCCAAGACGATCCAACTCTGCTTCCATTTCTTCAATACCTTTGTTT ATTAAGGCAATGATACCTGGTATTTTGGCTTTGATTACAGATTCCAGATGCTGGGAGAGAAGTTTTGCGAGATATACAGAACCCATTTTACTAG CCAAGTGTCCATAGTCAGGACTGGTATAAAAGTACTCCTCCTCCCTCCGCCTTGCATACATCATATCAGTATTTTTCATAATATCAGCTTGAGA TCTATTCACAATCCCCACCCATGGATGTTGCAGTCGATAAGCTCTGCCTTCAAGGACATCTAATGCGTTAGTTCCTTTGTCCATCAGATCAAGC TTGGTCAGCACACCAAAGGTCCTTTCACCTGTTGGATCCACCTCCTTAGCAAGTTTAATAGCATCCGATGTTGCAATATCTTGGTTGGCAGGTG ATATTGCTAGTATTATAGAGTTGGGCTTCTCAACATAAGCTCGAACCATCTTTTCTATGTCTTCCACAATGGTTTCAGGTTGTCCCTCAACAGC AACTTTTGTCAGTCCAGGTAGATCGATTAAAGTTAAGTTGACAACTCTAGGGGAATATATGCTGAGATGAATTGGAATTGGAGATATTTGTTTT GACTTCCCAGTGATTCTGTCTGTTTCATCTTGAATCTCCTGACGTACCAAAGAGAAATCAGTAAACCGCCTCCGTTGCAGATGCCCAAATTCAG CATACTCTTCTCCGCCATCCGTCTTATGCAACTGCAACACCAATGGTCGCCTTGTGACAATCCCAGATCCTCTAGGAAGAAAATCTCTCCCGAC AATGCTCTCTAAAACCGAAGACTTCCCAGAACTCTGACCGCCAACAACGGCAACAGAAGGAAGAGCGTCCCAAAGAGAGGAAAAAGTAGAGTCA TCGCCGCCGTGATCACCTAAAGCCGTACAAGCTCTTTGTATACGGTTTACTAATCCGATCAAGCTCTCCATGGTCGCCATAACTAATTCTTTTA AGATCTGTACGTATATGTGTTGTTATGGAGGGGATTGTAGAGAGAGAAAATCGTTGGATTCTAGAGAGAGAGAGAATGAAGAGTGTTTGAATTG AATTGGTCGTCGA |
Primers for UN05048 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GCAACAGAAGGAAGAGCGTC | 60.142 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 244 | 1742 | 1985 |
2 | ACAACGGCAACAGAAGGAAG | 60.291 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 250 | 1736 | 1985 |
3 | CTCTCCATGGTCGCCATAAC | 60.483 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 136 | 1850 | 1985 |