Simple sequence repeat (SSR)
>UN05046 TGACAGATATACATTATTTTTCTATTCTCGATAATAATCACACCGTATGTGCATAGCATTTTAAAAGCCAAATTAAAACCAGCTTGAAGTGCAA AGATGATGACAATACAACTTACAAAATAAAGATATCAACGCACCAACACTGCAGATTCGATTTCATCTTTTGCTTTCTTGTATAACTCGAGTCT TTTGGCAAGATCTTGTCTCTGTGACATCAAAGATGGATCTTCATCTAGCAACTCCCCCAGCTGTTTACCCTCTTTCCTTCCTATTTGCGTGTAG AAATAATGGAGTAGATTATTCCTGGCCTCTTTGACTTGACAATAAACAACTGCCTTCGGGATTGTGACCTTAAGTGTGTCAGACACCATACTGA TATAAGACGATACATTTGAGCCAATTCTCCTAAAATGTGCATCTCCATAGCGATCCCCTAATGGGTCAGTCGGGTTTCCACGTTCTGCAGATGG GATACCACGATCTGAAGGTGGGTTTCTGCGATCAGCAGATACAGCTCTGCGGTCTGTAGCAGGTGAAGGAGCGGGCCCATTCTCAAACTCCAGA GGTAGTTTTCTAAAGAAATCTACTGTCAGGTAAGATGACTCCATGTCCACCAATCTGATAACGGTTTTCTTACTTTCCGTACGGAATTTTTCCA ATGCTTCAGTAGCAGCAGCAGCAAGAGTAGCTTGAAGTGATGGAAACCGCCTCAACTCCTTAGTTTCTCCAATTGACTTCCTGACAAGTTCTTT AAGAACAAAATGCACAGCGTCTACGGAAGCTTCAGCTGGTCCCCTAAAATAACTCAATGACCCCTCAATAAGGCGTCGATAACCTTGTTCTGGA GCAATCAAATGAGGCTGATATCCATCTGACTCTGAAACAATTTTCTTCACATTTGGCAGGGAAAGATGCCTATCAAACGGAAGTTTTCTCAAAG CAGCAGGAAGCTGGTTGTCAAAGACTCCATAAATTCGGTCACCTCCAGCCCGCCCTCCATCTAGATGCTCTTTGAATATCTTGTCAAAAGCACG ACAGAGTTCCAAAATGGTGTACAATTTAGCCCCTTCATCAACTGCAATTGGCCTCCCAAGACGATCCAACTCTGCTTCCATTTCTTCAATACCT TTGTTTATTAAGGCAATGATACCTGGTATTTTGGCTTTGATTACAGATTCCAGATGCTGGGAGAGAAGTTTTGCGAGATATACAGAACCCATTT TACTAGCCAAGTGTCCATAGTCAGGACTGGTATAAAAGTACTCCTCCTCCCTCCGCCTTGCATACATCATATCAGTATTTTTCATAATATCAGC TTGAGATCTATTCACAATCCCCACCCATGGATGTTGCAGTCGATAAGCTCTGCCTTCAAGGACATCTAATGCGTTAGTTCCTTTGTCCATCAGA TCAAGCTTGGTCAGCACACCAAAGGTCCTTTCACCTGTTGGATCCACCTCCTTAGCAAGTTTAATAGCATCCGATGTTGCAATATCTTGGTTGG CAGGTGATATTGCTAGTATTATAGAGTTGGGCTTCTCAACATAAGCTCGAACCATCTTTTCTATGTCTTCCACAATGGTTTCAGGTTGTCCCTC AACAGCAACTTTTGTCAGTCCAGGTAGATCGATTAAAGTTAAGTTGACAACTCTAGGGGAATATATGCTGAGATGAATTGGAATTGGAGATATT TGTTTTGACTTCCCAGTGATTCTGTCTGTTTCATCTTGAATCTCCTGACGTACCAAAGAGAAATCAGTAAACCGCCTCCGTTGCAGATGCCCAA ATTCAGCATACTCTTCTCCGCCATCCGTCTTATGCAACTGCAACACCAATGGTCGCCTTGTGACAATCCCAGATCCTCTAGGAAGAAAATCTCT CCCGACAATGCTCTCTAAAACCGAAGACTTCCCAGAACTCTGACCGCCAACAACGGCAACAGAAGGAAGAGCGTCCCAAAGAGAGGAAAAAGTA GAGTCATCGCCGCCGTGATCACCTAAAGCCGTACAAGCTCTTTGTATACGGTTTACTAATCCGATCAAGCTCTCCATGGTCGCCATAACTAATT CTTTTAAGATCTGTACGTATATGTGTTGTTATGGAGGGGATTGTAGAGAGAGAAAATCGTTGGATTCTAGAGAGAGAGAGAATGAAGAGTGTTT GAATTGAATTGGTCGTCGA |
Primers for UN05046 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GCAACAGAAGGAAGAGCGTC | 60.142 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 244 | 1936 | 2179 |
2 | ACAACGGCAACAGAAGGAAG | 60.291 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 250 | 1930 | 2179 |
3 | CTCTCCATGGTCGCCATAAC | 60.483 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 136 | 2044 | 2179 |