Chrysanthenum transcriptome database

Simple sequence repeat (SSR)

>UN05046
TGACAGATATACATTATTTTTCTATTCTCGATAATAATCACACCGTATGTGCATAGCATTTTAAAAGCCAAATTAAAACCAGCTTGAAGTGCAA
AGATGATGACAATACAACTTACAAAATAAAGATATCAACGCACCAACACTGCAGATTCGATTTCATCTTTTGCTTTCTTGTATAACTCGAGTCT
TTTGGCAAGATCTTGTCTCTGTGACATCAAAGATGGATCTTCATCTAGCAACTCCCCCAGCTGTTTACCCTCTTTCCTTCCTATTTGCGTGTAG
AAATAATGGAGTAGATTATTCCTGGCCTCTTTGACTTGACAATAAACAACTGCCTTCGGGATTGTGACCTTAAGTGTGTCAGACACCATACTGA
TATAAGACGATACATTTGAGCCAATTCTCCTAAAATGTGCATCTCCATAGCGATCCCCTAATGGGTCAGTCGGGTTTCCACGTTCTGCAGATGG
GATACCACGATCTGAAGGTGGGTTTCTGCGATCAGCAGATACAGCTCTGCGGTCTGTAGCAGGTGAAGGAGCGGGCCCATTCTCAAACTCCAGA
GGTAGTTTTCTAAAGAAATCTACTGTCAGGTAAGATGACTCCATGTCCACCAATCTGATAACGGTTTTCTTACTTTCCGTACGGAATTTTTCCA
ATGCTTCAGTAGCAGCAGCAGCAAGAGTAGCTTGAAGTGATGGAAACCGCCTCAACTCCTTAGTTTCTCCAATTGACTTCCTGACAAGTTCTTT
AAGAACAAAATGCACAGCGTCTACGGAAGCTTCAGCTGGTCCCCTAAAATAACTCAATGACCCCTCAATAAGGCGTCGATAACCTTGTTCTGGA
GCAATCAAATGAGGCTGATATCCATCTGACTCTGAAACAATTTTCTTCACATTTGGCAGGGAAAGATGCCTATCAAACGGAAGTTTTCTCAAAG
CAGCAGGAAGCTGGTTGTCAAAGACTCCATAAATTCGGTCACCTCCAGCCCGCCCTCCATCTAGATGCTCTTTGAATATCTTGTCAAAAGCACG
ACAGAGTTCCAAAATGGTGTACAATTTAGCCCCTTCATCAACTGCAATTGGCCTCCCAAGACGATCCAACTCTGCTTCCATTTCTTCAATACCT
TTGTTTATTAAGGCAATGATACCTGGTATTTTGGCTTTGATTACAGATTCCAGATGCTGGGAGAGAAGTTTTGCGAGATATACAGAACCCATTT
TACTAGCCAAGTGTCCATAGTCAGGACTGGTATAAAAGTACTCCTCCTCCCTCCGCCTTGCATACATCATATCAGTATTTTTCATAATATCAGC
TTGAGATCTATTCACAATCCCCACCCATGGATGTTGCAGTCGATAAGCTCTGCCTTCAAGGACATCTAATGCGTTAGTTCCTTTGTCCATCAGA
TCAAGCTTGGTCAGCACACCAAAGGTCCTTTCACCTGTTGGATCCACCTCCTTAGCAAGTTTAATAGCATCCGATGTTGCAATATCTTGGTTGG
CAGGTGATATTGCTAGTATTATAGAGTTGGGCTTCTCAACATAAGCTCGAACCATCTTTTCTATGTCTTCCACAATGGTTTCAGGTTGTCCCTC
AACAGCAACTTTTGTCAGTCCAGGTAGATCGATTAAAGTTAAGTTGACAACTCTAGGGGAATATATGCTGAGATGAATTGGAATTGGAGATATT
TGTTTTGACTTCCCAGTGATTCTGTCTGTTTCATCTTGAATCTCCTGACGTACCAAAGAGAAATCAGTAAACCGCCTCCGTTGCAGATGCCCAA
ATTCAGCATACTCTTCTCCGCCATCCGTCTTATGCAACTGCAACACCAATGGTCGCCTTGTGACAATCCCAGATCCTCTAGGAAGAAAATCTCT
CCCGACAATGCTCTCTAAAACCGAAGACTTCCCAGAACTCTGACCGCCAACAACGGCAACAGAAGGAAGAGCGTCCCAAAGAGAGGAAAAAGTA
GAGTCATCGCCGCCGTGATCACCTAAAGCCGTACAAGCTCTTTGTATACGGTTTACTAATCCGATCAAGCTCTCCATGGTCGCCATAACTAATT
CTTTTAAGATCTGTACGTATATGTGTTGTTATGGAGGGGATTGTAGAGAGAGAAAATCGTTGGATTCTAGAGAGAGAGAGAATGAAGAGTGTTT
GAATTGAATTGGTCGTCGA

Primers for UN05046 SSR

Primer pairForward primer (5'-3') Reverse primer (5'-3')Product
SequenceTemperatureSizeSequenceTemperature SizeSizeStartEnd
1GCAACAGAAGGAAGAGCGTC 60.14220GACGACCAATTCAATTCAAACA 59.84522244 19362179
2ACAACGGCAACAGAAGGAAG 60.29120GACGACCAATTCAATTCAAACA 59.84522250 19302179
3CTCTCCATGGTCGCCATAAC 60.48320GACGACCAATTCAATTCAAACA 59.84522136 20442179