Simple sequence repeat (SSR)
>UN83626 AAAAAAAAGTACACTTATATAAATTATAGATAAAGAAAAAGAATTGTGACCTTGAGATGAGGTCATAAAACAGTTCTAATGATACATCCAATAA CTAAATTTTCAGGCAGTGCTTATATAGCACCACAAGAATAATTTGCACAAACCAAAATGAATTCAATTATGCTAAAGTGGAAACTCATGTCTAA ACTCAACCTTCAGTGTTGACGCCTTCCGAATTAAAGAGGACGTGTGTGGCGGCCTGCAGCCTTTCCACATAACCGTGCATTCTTTGGGATTGGG AACTCGTCTCTGATGGACCCTGAGTTTGTGTAAACACGAAGGTAAAATTGTTCACCTAGGTATTGTCTGGCCCAGTATTCTGTTCTCACGTTCC ACATTCCAACGTTATCAAGTGCAACGTAAATGGCTGACCATGATTTTGGGTAAACCTGAATGGTGCTTCGTGCAACCCCATCTCGAAGGTTGTA ACCGTTCCTGCTAGCTTGAGTCCATTGTCCTCCATCCATTCCGACAACAAAGAACTGATAGCCATCAAGGTGATAGCTAAGCACAATATCTGAA GGATTTTCAAAGACTATTTCAACAAACGATCTAAAATCAGCCCCCATAACTGATGTATCTTGATAAAGGCCGCCACCTGTTGGTCTATCGGATA TGCTTCCAACACGGAAAACACCACCAATGTTGAAATAATCGGCAAGTTTAAGAGGAGTGTCAGCTGGGACGAAGGACACACTGTTGATACCGTA TCGTTGTTTGCCATTAACTTGACCGGCAGTACTTTGGAGAATGATGGTTCTGCTTGTGTTTATCATGCCGTAGTGGTATGAACCTTGTGGGTTT GGTCTTGGTCCGCTAGCTGTAAGATTGGTCCTGATGGAACGGGCCTGGTTAAGGGACCAATCGACTTGAATGGTGGGCCCACCAGGGATTGGGC CAGAAACTTTGCCCGCGGAGTTGGCATAATGAAGGACACCTGTTGTTGTAAGGATTGGAGTAGTGAACCGGGAGGACACAACAATGTAGTAGTC CTGGCCGGGTTGATCAGCTGTAAATAGTACTGAATATGATTGACCAACATGAACATCTAGAGATGAATATGTTTGTTGGACCGTATGTGTTCCC TCCACTTCGACTAATTTCATCTTGTGGTTTTGAATACGGAAGTTTAGGGAATTTTGTAGTCCCACGTTTGATATTCTAAGCCTGTATGTTTTTC CTTGTTCAACATTGAAATATGCACCACCTGGTCCACGTCCATTGATGAGTATTCCAGCAGGGAAAGGTATTCTATGACCTCCGTCTAGAACTCT TCTCAATATAGTGTGGTTAGCTTTGTACCAATCTCCGATGAGCACGGTGTAGTCGCCTGCGGGTTCATCAAATGGGACAGGGATTCTAGGACGG CTTAGAATCCTAATACCTCCGAACCCGCCAGCAGCTTTGTGGAACGATAAAGATGGGAAATAGTAAAAGCTTCCGATTTGATCCTTGACTTGAA GGATGTATGTGAAGTTTTTACCCGGTGGAATTGGACATGTTGTGCCGTAAACACCGTCTTCAAATGAATTCCTTCTTTGTTGAATTCCGTTCCA GGAGATCAAAAATGGCTCAGGTAAACTGTTGAACACGTTGATAATAAGATTATCATTTGTAACAGAATGAAGATCAGGTCCTGGAAATTGTCCA TTAATCAATATACCCTGTTGACGAACTCCAAGTGGATAAATATCACCCAAAGTAACATTCCAGTTGAAGAACTTGTAGGGATCTTCAGCTCCGG TGATAGCAACTAGAAGTGCACCGACAGCGAAGCAAACGGCGACTTTGAGTTGCTGCATTATTATTATTATTAACTGTGGCCGGTGAAATAATGA AAAAAGTTTTGTGGAGAATGGGTTGGATATAAAGTGTTGT |
Primers for UN83626 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CAGCTCCGGTGATAGCAACT | 60.419 | 20 | ATCCAACCCATTCTCCACAA | 60.173 | 20 | 131 | 1778 | 1908 |
2 | TCTTCAGCTCCGGTGATAGC | 60.504 | 20 | ATCCAACCCATTCTCCACAA | 60.173 | 20 | 135 | 1774 | 1908 |
3 | ACCCTGTTGACGAACTCCAA | 60.545 | 20 | ATCCAACCCATTCTCCACAA | 60.173 | 20 | 205 | 1704 | 1908 |