Simple sequence repeat (SSR)
>UN82928 CACAAACAACTACATAAACCGCTAGAGTTCTACATAGCGTGACCAGTCTTACCATCAGAGGGTTATGAACACCGGTGTTCCCCAAAACATCTGA TCCCTTATGAGGTCTCATATAGTAGACCGCTAAATAGACTTACAAATAATGTACATACTGAGATAGACTTTTGGCAGAGCCAAAACACAAGTTT CAGAAGAACCGTTACAAACATTACATCTTAGGAAATGCGAGATGAAGCACAGCAATCAACGGTTTGGCATGTTCTTCGGTTTGACCCATCTTAT AGATATTCAATTCTGATGCACCTGCGTTTTGGCTCCAGTTCTTAAGCACCATTAATGAGACAGGCCCGACCTTATCACCACTTGAGCTAGTAAC ATACCATTGAAAGTTTTCAGTGTCTTCAAGCTCCTCCTTACTTAACGCAATCGTTGACTTTCCTTCATTAGATTCAAAGAGTTGACTTGGATTT TTGACAACTGATGATTTCCTTGACTTGCTTTTATTCTCAGCCGATTCAAATATTTTCTGCAGTTGTGCTGCCAATTCCATCTTTTCAAATCCAG GCACTTCAGGTTTGCTTTCTTCTGAAGAACCTTTAAAATTTCCATATGACATATTAGTTAATGTCGACTTTGGTGAGTCTTTGTTGTCATCGGG ATTAGCTTCTTCAAAATCTGGAACCACAGGCGGCACTTTTTCTAGCAACTATTTCTGGTTTTCTGGTTTCTGTAGGAATGCCCTTCTTTGCAGG TACTTAAACAACTCTTTTCTCCATCCTTTTTCATTCGCTTGATCAATACGGTGTTTCAATAAAGCTAGCTCTCGCGGAAGCAGTGTGTTTTAAT ATCTCTGTGCAAACTCTTAGCCTTTTCTTCAAGTTCTACCAATTCAAGCTTTTTAAGTAATCCGGATTTCACTTTAGCTTTCAATTCTTGACAT TCTTCCTCGGTAAATTCATCATCTGATAGAGAACTGATCCGGATTTCTGTTTCTAATGCTTGTAGCACAACAGTTTCCTCATTTTCACCAACCA AACATTTCTTTACGCCTGTTATTTGCATAAGCTGATAAGAACCCTTTGAAAAGCAACTGTTTGGATCTTCTTTAACTCTCACAAAACTTCCAAT TACCTTATTCTCAAACGTCTCGGGTTCTTTTTCAAACTTCTGCACTAAACTCCTTCTCAAGTACACAAGCCTGATGTTTTCAGGAACAATTGAT GCAAAACGAAAGTGTGAAACATCAACCACCGGCTCTTTTTTCTCTACTATTTTATCTGAAGTTTTCTTTTTCTTGTTTTTATGGATTACTGGCG CCTCGTCAACATGAACATGAACATTTTCCTCTGAATCATACCTTAAATCATCATCATCATCGTCATCATCATCATCATCCGATGATGACACCTG ATTCTCAGCTAAATGAGTCTCCAACGAGTCATATATTCTATTCATCCTTATTGTTTTTCTGTTGAAAATAGACTTTAACCATTCATCGCATTCA ACTATCTTCTTCTTTTGGAGCAAGTCTTTATCCATACTATATCTCTTTACGATATTTTCTAAATCCCTTTGAGACAACGCATTAGTTGTATCTA TCTCAAGATGTGTAAGAAATTCGATAAGACGTGTTGATCCCCAGCCGATGAATTCGTCCTTGTTTGACTTTGGTTTGACTTCTGGTTTGACCTT TTTGTTGGCTTTCTTCTTGGATGACCCAGGTGTTGATCTTTTCAATTTCTTTCCGGAATCATGTGGTTCTGTTTCTTCATTTTCGTCAGAATCA GAACATTGGTACTCATCACTGTCTTCACACTTATCTGAATCATAATTTTTTCCTGATTTCAGTTGCGCCTTTGCAGATGTCAGAACATCAAGAG TCAACTTTTCCACTTCATTAATAATCTCCCAGTATTCCTTATACAGAGTCTCATAAGTGTTTCGATTGTCAAAGTCTACTATTTCCCCGTCAGA GTCCACATCTTTCTTTTCTTCGACAAGCAGTGCAAGCTTCAAGCAGTGATCACAGAATCCTTTCTTCCCTTTCACTTGGACAAAATCAGCAGAT TTGATACAACGTCCGCATACACTTTTTGGACAGCAATAACATTGATAATCAGAAGGTCTACGACAAGTATCACACTTATGCCAATCACAAATAA ACTTTTTAGCTTTTGCAGCCGCCTCATCCACGCAGTCAATATGATAAGATTTTATGCAGTCCCTATGGTCACACATAATCACTTCACCACCATC TTTACAAACAAAACACCATTCTTCAGAATCTTCATCATTTTTACACACTTTTCTACCCTTCTTTTTCATCTCTTTCAACACAATGTGT |
Primers for UN82928 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TTATGGATTACTGGCGCCTC | 60.06 | 20 | AGTTGAATGCGATGAATGGTT | 59.448 | 21 | 207 | 1301 | 1507 |
2 | TTATGGATTACTGGCGCCTC | 60.06 | 20 | GTTGAATGCGATGAATGGTT | 58.424 | 20 | 206 | 1301 | 1506 |
3 | GTGTGAAACATCAACCACCG | 59.855 | 20 | AGTTGAATGCGATGAATGGTT | 59.448 | 21 | 274 | 1234 | 1507 |