Simple sequence repeat (SSR)
>UN81808 AAAGAACCCACCAAAACAAAGGGTGAAGTTTCTCTACTGATCTATGGTACAAATAATCCAAGTCAACGTTATAGAACACCTTAAAAGGACTCAC TTTAGTATATCCGGCACAGAAACTGCCTGTACATCGATTACTTCCAGTAGCCTCCATATCTTCCTTTGTCAGACAAATTTATCTAACTGTTACA GATAACACCTATATCACTCTCCCTATGAATCATTGTCACCATCTTCATCTTCATCACTACCGCCGTCTCCTTCTGCTTTTACTTCATCACCACC GGCTTCTGCTTCTGTTTCTGCTTTTGGTTCAGCTTCCTTTTCTTCTTCCTCCTCATCTTCATCACCAGACATTTCATTTATCACATCAGTTATT ATAGCCTTCACCTCCGTCTTTCTATGCAGTAGATCCTGATCAAAGTGGGCACCAAGCTGTTTGATGATGTCAGACAAAGTAGCAGTGTTGAAAT CGACTTCCTTTAAAATGCTAACTACAACAGCATGCATCTCTTCATTAGTTGGTTCTGCTTTTGCCTTTTTGTTGGCTTTTCCTTTGCCTTGTTC TTTTGAAGAATCTTTCTTGACAGTGGCCTTTGGCTCTACCTTCTTGCTACTCTTTTCTACCTTAGATTTCTTAGTAGATGATACATTCTTGGAA CCGGAAGCAGAAGACTTTTTATTGGATTTAGTGGGTGTTTTCACATCAGCCTCCTTTTTAACGGTTTTAGATTTCTCTCCGGTTTTGGCTCCAG AATCCTTCTTGGCACTCTTCTTTGAAGAAGACTTTTTCGGTGTTGGCTCTGGCTCTGGCTCCTCTTCACCTTCTGACTTATCTTCTTCCTCATC ACCGCCTTCATCCGACTTATTTTCTTCCACATCACTTTCTGGTTTTGAAGGGGTATTCTTGTCTTCTTCCTCCTGAGACTCGTCTCCTTCACTC TCTGAACCTGCAGCTTCTTCCACATTGTCTTCTTCCTGAGTCTTGGATGAGCGCTTGCGCTTCTCGCCAGATTTTTTCGTGGATGATGAGGATT TATGCTTTTTTGCCTTGGTTTTTTGTTTTTTCGCTTTCTGTTCCTTTTCAGCAAGCAGGACTTCAGTCGTCGCATGTGGAGATTGAAGAAAATC TAGCAACTTTGATGTGATGTCTTCTTTCTTCTTAAGTTGGTTCTTGATAATTTGAAGATTTAGAACATCACAAAAATCAAACAACTTCTCTCTT GTGCATTTGTCAAGCTTCTCTTTTAACTTTGCCCTCTGCTTTTCCTGCTCATCATCAGCCCAGACAAAGCCAGAAAACAAGCCAATGTTCTTCT TCAAAGTGACCACCTTAGCTCGTTTGTTATAAAGAATGCCATGCAGTGATTGCAGGTTTTCATCAGGCTTTCTCTTGGACAGCTTGTATGCCAC ATTCGGAATCTCCTTAAGCTGAGTCCCCGAACCCTTCTCAATCGTAAACGCCTTCGGAGTCAACGACTTATTCATAGACTCCATAAACCTCTCC ACAGTCTTCCTCTCCCTAGTCGGCCTCTCGCTCGGCGTAACCGGACTACTTTCGCCTTTTTTCGCTCTTTTCGCGCTACCTTTTTTCTCGCCTT CACTCACCACCTCCTCTTGTTCTTTCATCTCAACGTCTTCTTGTTGTTGTTGTTGTTGCTGTTTCTTGTTTTCTAGGGTTTCGATTTCAGGCGC CATTACAATCACTCTAATCAGAAACAGTAAACCCTAGGTTAGTGTGTGTGTAAAGTAACAGATCTTGGTTTAGTATGTGTTTTAGTGTGTGTGT GTGTGTTTTAGGGAGTGAAGGAAGAGAGGAGATG |
Primers for UN81808 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CCGAACCCTTCTCAATCGTA | 60.066 | 20 | TTGTAATGGCGCCTGAAATC | 60.971 | 20 | 264 | 1437 | 1700 |
2 | AACCGGACTACTTTCGCCTT | 60.13 | 20 | TTGTAATGGCGCCTGAAATC | 60.971 | 20 | 158 | 1543 | 1700 |
3 | CCGAACCCTTCTCAATCGTA | 60.066 | 20 | AGTGATTGTAATGGCGCCTG | 61.052 | 20 | 269 | 1437 | 1705 |