Simple sequence repeat (SSR)
>UN81000 ACCCATGTGACCTTTGAATACCCATTGGGCAATTCTTGTATCAAACAACCAGAAGGCCTTCTTCTACATCTTGAGATCGACGAAGTACGCAAAT TATCCAAAGATACATCAACCACCGCCCATGTACCATCATTATGTTGTTTACAGTACCTAACAAAGTAGTTTTCTCTTGTTGGAACCAGTGGTGA AGGAACCTGGTACTCGGCTGTCATCACTTGTAGAGCTCCATTGTAATTGCCAGCAACTCCTGTTGAAAGCACTTCCAAGGTCATTGCTCTTGAA ACAATGCCAGAAAACACATTTGACCACTGATTCACATCCATTAGAATTTCAACAAGAGTGATATGATTCATGATGACCACTGCAGATTCCCTTG AAGCTTCGGATATTAATCCCAATGGTTTTGGACCAATCCCACGTGGAAAGGTTCGCATGTACTCTTCTTCACTCAAAGCCTCGGATGACGTATC CGAGTTTTGAACCCACAAGGGATCACCAGCTTGAGCCATTCTGATTAGCTCCTCCATGGCTGCGACTGCTAGCTCGATTATAATAGGTTTGTCT GCTTCAGTTGGGCCTGAAACTGACCGAAGAAGGTCATTCGCCCCATACATGTCTCCTACCATCCCTTGTTGTGGGCCGAAATTAGGAACGCCTA GATCAATTGAGCGAGTTGATCCATGAGACGGCATGTTGGGATAACTTAACACTGGCTTGCCAACATACTTTGCAGCGATTCCAGATATCCTATC AATCTCTTCATGTAGCCGAGTATTTTCTATTCTCAACTGTTGTTCATCAAAAGACATCTCTCCGATAGCAGCAGGACCACCACAGTTCGGACAA GTAGCATTGGCAAGGGCTTCTTTGTATCGTATATTCTCCATTCTTAGCTTTTCATTGTCATTCCTCAGTGAAGAGTTCTCATGGCGTTCATGTT GAGCCTTCATTTGAGTCCTTTTATTTTGGAACCAAAACTTGACTTGCAGAGGCTCCAAAGTTAATCTTCTTCCAAGTTCCTTCCTTTGTTTATC ATCTGGATGTGGGCATTCTTTGAAAAATGCCTCTAATTCCTGGATTTGGTGTTGTGTGTGACGATGGTAACGTTTCTTCTTGTTGGGACGTTGA CTGGGATCCTGATCATCGCCGGAGGGAGCTTCCATGATATCAGTACCAGATTTGCTCTCGTAGTCATCATCTCTAAGCATATCAAGCTCATTCT CTGGTGTTTTATGGCTCATGTCAAGAAGATGATGGTGATGGTGACTCTCAAACATGTTGGGTTGAAACATTTTCGTTTGTTCTTCACACTCTAG TATATATTGAGTCTAGCAAAAAGATCTGGTGTAGAGGAATAAAGGGTTAACTGGAAACCACTTTTAAGAGAGTGAAAGCGTGGTTTTCAGGCTG GTTTCCATTGAAGCTACCTGTATTTTTCTTGTGAATAGAATTTAAGAAGAATGAAGAGAGAGAGAGAAAGAGAGAGATGAACAGGTGGGAGAAT |
Primers for UN81000 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GTGGTTTTCAGGCTGGTTTC | 59.574 | 20 | TCTCCCACCTGTTCATCTCTC | 59.243 | 21 | 107 | 1396 | 1502 |
2 | TTTTCAGGCTGGTTTCCATT | 59.546 | 20 | TCTCCCACCTGTTCATCTCTC | 59.243 | 21 | 103 | 1400 | 1502 |
3 | GTGAAAGCGTGGTTTTCAGG | 60.668 | 20 | TCTCCCACCTGTTCATCTCTC | 59.243 | 21 | 115 | 1388 | 1502 |