Simple sequence repeat (SSR)
>UN77294 GGCGAAACAACAAAGACGTAAAAGAGAACATGAAACTATGGAGGTTGGAAAAGTAGAAAATAAGTGCATCAAACATTTTAAAATACCAGTCATG AGGTTTACCATAGCAAAGACCTAGCAGCTACTAACGTTTTTTTTTTTTTTGGAAACATACACAAACTAAAATACTACAACGTTTTTAAAACAGA CCATGAAAGCAAATACAAGTTTTTTTATTCTGCTAAGCAAATCATAAGTTTTTGCTACATAAGTAAAGACTTCATTTGCATGACTGGCTTGAAC TTCAGAAGAATCAGCAGAGTCCAAAACAAAAAGATTGATGCATCTAGGGTTGAATCTAGTGACCCTGGCCCATGTACGATCCACCACCTTGTTG CGGCCTTCCGCCTTGACCCATCTGTGGATTACCATACCCACCTTGCTGATACCCTGCACCTCCTTGATTCCCATATCCAGAACCCTGCGGGTTT GCAGCACCAAGTCCTCCTAAAATATTACCAATCCCCATAGCTCCCTGCGATGCAAGCAGGGCAGTCAGCGCCTGCCCCAAAACCGGAGTCAATG CACCAGGCGGAGGAACACCAGGGTTGAAGCCCATACCCGGGCCAGAAGGCGCCATCAAATGCCCTTGTCCACCACTACTTCCCATACCTGAATA CTTGGCCTTCTTGGAATGATGATGCCCACCACTACCATACACACCTTGATGATGATGCTGATGAGCACCACCACTAAAACCACCTTTAACTGGC TTGGGCCCATCAATCGCCTTCTGAACATTCAAAGTATGGCCTTCAAATATCTTATGCGGCTCCTCCAAGGCCTTCTTAGCACTCTCAATAGTCT TATACACAAACAACGCAAACCCTTTCGGCTTACCCGTCTGCTTATCCAAACCCAATGGGCCTTCCTCAATCTCCCCATACTTGGCAAAAAAGTC AGTCAACTTGGCAGGATCAATATCGGCAGCGACATTACTGACAAAAATCTTCCTTTGCGTATACTCGGAGACCACAACGCCCTTACTAACAACA GGCGGAGGGGCAGGAACAGGGCCGGCACTGGCCAGCTGACAGCTAGTAACCCTGTTCCCAATCTTCTTCTGGGGCTCCTTCAAAGCATTCTTGG CGCCAATCCTCCTCTTAAACAAAATAAAGCCGTAACCTTTGGACTTTCCACTAACCTTATCAACAACAGCTTTACAATCCTCAATCTCACCATA CTTTTCATACTCGCTAATCAAAGTCTCGGTAGTGGTATCCCAACCTAAGCCATGAACAAATATCTTCCTATGAGCAGGATCAGCATCTGCTATC TTTTCGACACTTGGTATTAAATCAGGATATTTATCAACTGCTTCTTTCAATAATAAAACTAATTGCTCTTTTGAAAAAGGTTCTAGAAGCTTCT CTACTGGCTCTTCTGGTAACTCCTCCGTTACGTTTCCGTTAGTTTCGATCTTCACATCTTTAACGTCCTCTTCTTCTTCTTCTTCTTCATCGTT TTCTTCTTCTTCAACGTCGTCGTTTTCGTTATCTTCTTGCTCATCGACAGGTTGTTCTTGTTCTTGTTGTTCCTCTTCTTGTTTGATTTCTTCT TCTTCTTGTTCTTGTTGTTGTTGCTGGGGTTCTTCTTCTGTGGTTGGTGATTGTGAGGGTTGTGAAGCGCGTGACTTTCGTTTTTTGGCCATGG GGGAATTAGGGTTAGGGTTTCTTTTTATTTAGGGTTTCGTCAGGGAGATCGATTGGCTTATC |
Primers for UN77294 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CCTCCGTTACGTTTCCGTTA | 59.99 | 20 | AGAACCCCAGCAACAACAAC | 60.012 | 20 | 200 | 1432 | 1631 |
2 | CCTCCGTTACGTTTCCGTTA | 59.99 | 20 | CAACCTGTCGATGAGCAAGA | 59.984 | 20 | 127 | 1432 | 1558 |
3 | CCTCCGTTACGTTTCCGTTA | 59.99 | 20 | ACAGAAGAAGAACCCCAGCA | 59.844 | 20 | 208 | 1432 | 1639 |