Simple sequence repeat (SSR)
>UN04048 AATTATATGAGCTCCAACTTCATATTCCGCTCCAGCTAGTTTTGCTAAAAACACCCATAAGCAATGACGAAAATGTTTTCTCCAGGTCCAATTT TTCCTTCGGTAGCTTCAACTTTGCCTTAAGATAAGCTCCTTCCAGTATATTTGTGTTGCTCTTAACAATGTGTCTTTGCTGATGTTGAATCTTG GATAAAAAAAAAAATTATCCTTTTTTGCAATTTATGCATCCCACTCAAGAGAGTCCGAACCCGAATTTAGTTTGTGTGTGTCTCTAAGTGCTGC AAATCAATTTGATGAGATGAAGTGGTTGAACCGTTTGCTTTGTGTGTGTGTGTTTAGGACAGATGGAGAGGTGGAGGAGCTGGAGAAGATGATA ACGCCACGTAGCTTTGTGTGTGTGTCTT |
Primers for UN04048 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | AAGAGAGTCCGAACCCGAAT | 60.074 | 20 | CTCCTCCACCTCTCCATCTG | 59.785 | 20 | 127 | 235 | 361 |
2 | TTTGCAATTTATGCATCCCA | 59.898 | 20 | CTCCTCCACCTCTCCATCTG | 59.785 | 20 | 150 | 212 | 361 |
3 | GGTCCAATTTTTCCTTCGGT | 60.166 | 20 | CTCCTCCACCTCTCCATCTG | 59.785 | 20 | 277 | 85 | 361 |