Simple sequence repeat (SSR)
>UN70950 CTGCATATCATAGGAGGTTTAAAAACAACAAAATGGCAACAAAACCCAAAACTTAAAACAAGGTTTCACTAAATAAACATGATCATCACAGGAA TCCATACACAAGGAAATGAAACTCCCGGTAACACCTAATACACCATAAGGCTCTGCTGCACCCGCCTGGCTATATATTTTTGTATGGTCACGAC AAACATAACATACACATAAAAGACTAACTCCGTTTTGATCTCTGCAACGGGGGCGGCCTCGGGTGTGTTTCACCCTCTGAGCCTTGGCTAAAGA CTCGAGTCCTAGGTATATATATATCATCCTTAAAACTAACAATGTACAAGTTTTCATAGCTACAAACCACTTTTTATTTGCAAAAGAGACAACT CAACTCAGCTTCATGTTAAAACGAACCAAGAAACACAAACCGTTCATACTCCAGACTCGGTTAGCTGTACAACTCTCTCTCGATCCCGTTACAT TAAGTAGTAGTAGCATTAGCAGCAGCAGCAGCGGCGGCAGCAGCAGCGTATCCAGCCATTGCCCCGATCCTCTTCTCTCCAGCAGCAACAAGTT TCTCAACACGGGCAACTATATGTTTCCCATAAGTATATTTCTTGAGAGCATTCAGATGAACCTTAATTCGATTAAGAATGGTCTCAAGTTGATG GTCATCACACGTTTCCAGAACTTTCTGCACAACATAATTAGCAAACTGATCTTTCATCATCACCTGAAGTGGCTCATTTTCATCAGTGGTGCCT AGCATCTCGGTGACAAGGACTTGGCGTTCCTCTGGGGTACCAAAAGTCAAGCACTTCTCAACAACATTTGAGGCGAACTTCTGTTGACTCATTT GAACTATCTGCCCGGTTAACTGATCTATGATACAAGTACGTTCATGTGGCTTTCCATGTTCAAGTACATGCTGAACAACGTAATTTCCATATTG ATCTTGCGCCAGCATGCAAATAGATTTCAAGATTTCATCCATCACTATGCTTTGGGTTTTAGGGTCATGACAATGCTCCAAAACTCGCTGTATG ACGCGACAACCATAGGGATGGGTTGACAATGTTACAACTTGATCATAAAATACAGAGATGATAAAATGAATAGCATCTTCCGGCACACATTCAA TGCACTTCTGAATCACATGATTCCCATTCTGATCACGCACACAACGCATTATGTGACCATCAAGTTCCGCAACCATCTTTGTTTGTTGGTCAAG GTCAACAACCTCGATTGCCTTTTGGATAACCCGGCAACCATACATCTGAAGACTGAGCGTTAAGACATGCCCGTTAAGCTGGTCTGCCAGTTCT CTTATTTGAGCAGCATTTCCGTGTTCAAAAAACTTTTGGATGACATAATTACCGAACACATCAGTCATTAATGAGAAAGCTTGAGGCATAATTT CATTGAACACCATGTCTTTCTCTTCAACTGTAGCTGTTTCAAGCTTCTGTTGAATGAAGCGACTTCCATATTGATCAGCACTGAATTCAACAAC ATGCCCCACAATTTCCGACAGTTCAAAACACTTGGTTTTATTGCTCTTGAACTCATCTAGCAAAGACGAAGGAAAGCTTTCACCTCCAACTAAG TTACGAATCCCTGAAGGAAACCTCAAGCTCCTCTCACCATGTCTGCCCGGACTACCGGATCCAAGAGCAGAATTCGGCAGAAGAGAACTTCCCA AAGGGCTTCCAGGATACGACATGCCAAGGCCATAAGCCGAGTTCCCATAGTAACCATGGTTAAGACCGTATTGAGACTTCTGAGGAGATAGCAG ACCAGCTAGATAAGCTTTCTGAAGTGCTAGTAATTCCCTATCGATTGTTGCATCATTCAAAGCTGCAGCGTATTCACTTGACCTTAGGTTTTGA AGATACAACGGATCCATGAGTGGAACCTGAAGAGCAGTCGGGCTGTGATTTCCAACTCTATTAGATCCTAAGCCCAACCCACCTCCCATTGCAG CTGCCACAGCAGCATTGTCAAACAATGGTGGCAAATTCAGACCGTTTGACATCATAGTTGGTGACCCTGGATTCATCATATAACCACCACCACC ACCCATGCCATAGAAAGATGAATTTGGGCTATCAAGATTCTGGTACTGAGGAGAGCCTACAGCACCATTAGTTGCCCCTTTCATATACGAGTTC ACTGGTGACCCTTGTCCGTTTGTGGAGAGATTCAAACCCGAAAAACCGGTTATTAAATCAGAAGGACCGTTAATTCTCTGTCCTCCAACAGCAG AAACACGAGGACTAGCTGACCTGCCTATGAGCTGAGGGTCAGGGGTGGTGCTTCTAGATAAAGAAGCACCGAGAGCTGAAGCGTAGGTATGTGA ACCAGATGACATTCCCTGAGAAACCATGTTTTGGTGAAGATGAGCAAAATGGGACTCAGATAGGTCAGCATTTTCGTCAAATGTGTTTCGACTA GCCGGACGAGATGAATGCCTAGAGCCAGAAGCAGATTGACTTATATCATCCTGAATAATCTCAGCAATACTCTTCTGCCTACTTCCTAACCCTA AC |
Primers for UN70950 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CAACTCTCTCTCGATCCCGT | 59.405 | 20 | TGTTGCTGCTGGAGAGAAGA | 59.855 | 20 | 115 | 446 | 560 |
2 | CAACTCTCTCTCGATCCCGT | 59.405 | 20 | GTTGCCCGTGTTGAGAAACT | 60.156 | 20 | 135 | 446 | 580 |
3 | CAACTCTCTCTCGATCCCGT | 59.405 | 20 | AGTTGCCCGTGTTGAGAAAC | 60.156 | 20 | 136 | 446 | 581 |