Simple sequence repeat (SSR)
>UN70204 TTTTTAAAGAAAATATACTCATGGCTATTATATTGAAAACCTCGGATATCGTTTAAATTATCTTTCTATGAAAAAGAAAGGGAGAAACTAAAAT AAATAAGATGTGTATGGGACAAAGGGTAGTAGCATGATACAGAGTGGATCTTCCCAACAGATGGCGCTCTATCAATCTACTGTTACAATTTTTT TAGCTTTTGTCCATCATTGCTTTCTCTTTACTTCTATCTTCGGTTTTCCACCAAACCTAAAATGATCAACGTCTAGTTCGAGGCTTGCACCGAA ATTCAGCCAAGAGTGCAATGTGATCAGATGACCATTCAGGAGAAGGAAGTGCCGTATCTTTCCTCAAGCTATCCTCCTCCAGTAATTCCAACAA CGATTCCACTGTCAAGGTGTCCGCTGAGTAAAATATATAATCGAGTGTACCAATGAAGTCCCGCGTGCAATTTGTAAATAGAGGTTCATTTGTA GCAGGATCCACTCTCCTCTTTTGTTGCTCATAACCAAGATTAGCTCCAATTCTTGCAAAAGATGAGTAGGCACTAACCAAAGGCAGGGTGTGAG TCAATTTAGTAGCCGGTCTCAGAATTCCAAGAGGGTCTACGGCTAAATCCGGATGCATTGGATCAACTTTCCCGATTGCTAAAAGTGCATGAGG AGCACTTCCAGGAACTGAATTAAAATCCCCACAGACTAACATTGGTATATCCGCACTCGCAGCTATCTTTTCCAAACCTTTCAACAAAGTATGA ACCTGCCATAGTTTGACATCCTTTAAATCTTGTTGAACATTCACATGCGTATTTGCCACACAAACAAGTTGTCTCTTTCCTGGATTATCAACAC CGTGGTTACTGAATTTCGCTTCTAGAACAACGATTAGAGCAACATTATCCTTGACCAACCGATTTAAAGCGGTTTTCTTCTGAGCACTAGGAAC CAAAGCATCAGTTAAAGATTGTGCAGCTTTATTAAACTCAACCTCGTATTTTTTGACATGAGAAAATCTATCTCTGCGAAAGAATGTGGCACAT CCATCAATAGTCATTATACTTCCGTTAAAAACCTCTGCTGTTTTTTTCTTATATAGAGCCTGATAGCCATGTTTGTCCAGCTCAGGAGCAAAAA ACTCATCAAAATGATCGCTTTGAACCTCTTGAAGACAAACAATGTCAGCTCGGTAGCCAACTATTTCCCGTAACAAATTCTGTCTACGGTAAGG CCAAGAAAGGGCCCATGACGGACAATAACCATATAAATCACTCGTAGCATACGTATCCGCTAAAATATTATACGAGAGCACAGTAAAAGTCCCA TTAGATGAAAGACGTCCATCTAAATCCAGATGCCCCATGACATCAGAATTGCTAACCGAGATCAATTTTCGTGGACTCGGGGATGGAGCCGGAA TCACACGTGATGTCAATATGGTATTCGTGTGTCCAACGGGTGATTTCGTTTCTACATCAACCACCACACATTCAAACTTGAGAACATGACCGAT GTCATCAGCTGTTGGTGTATAAGTTTTAGACCGACCAACTTCAAACCATGTTTCACCACCGCTCCTCTGTGTCACAGCTGCAGGATATAAGGGT GTTGCACCATTTGCAAGGCTTGGAAGAGACTGTGAGCTTGATAAGCTTTGATTATTATTACTATTGTTGTTATTATTATTATTAAATCTTCCGA ATATCTCTTCTTCTTCATTTCCATTTTCATTAACAGCACTGGCAGCACGCTCATGTAGAACACGATGGTGTTGCCATGCATCAGAAAAACATTT TGGAGTGCAATGGTAGCTTTTATTGACAGGTATTTTGGCTTTTACACACCCTAAGCACTGCAAAGTGGCTT |
Primers for UN70204 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GCAAGGCTTGGAAGAGACTG | 60.134 | 20 | GCTGCCAGTGCTGTTAATGA | 60.019 | 20 | 128 | 1611 | 1738 |
2 | TGCAAGGCTTGGAAGAGACT | 60.134 | 20 | GCTGCCAGTGCTGTTAATGA | 60.019 | 20 | 129 | 1610 | 1738 |
3 | GCAAGGCTTGGAAGAGACTG | 60.134 | 20 | TTTGCAGTGCTTAGGGTGTG | 59.904 | 20 | 240 | 1611 | 1850 |