Simple sequence repeat (SSR)
>UN70010 TGGCGGGTTAAAAAAGTTAAAGAAGCTTTCACAATTCTCTGTTTTTGTAATTGGTGGCTTGGGGCTTCTGGCACCCTTCTTAGGTTTCTTCCTC AGAACCTTCTGGGTCAAATTTTTCCCTGGATACCAGTCGATCTCCGTCCCAACTGCTTTCTCTAAGATATGTTCCTCCTCATTGATCATCTCAT AAGTTTTCGTCAGCACAGAGTTCTTAAAGTAAGGATTGGTGTCAAAGAAGAATTCAAGCTTAAAACCCTTGGCGCCAGCAACTCTAGACCACTT AACATCTTTGAGATACTGCAGAGCTCCTTCATCAGATTCGGAAATCTCGTCAGCTAGCACATCATTAGACTTCATTGCAGTGAGCCAGAAACTT GGCACGCCTTTATCTCCTGTTGTCTCGTTTTCCTTATCCACGACATTATCATTTGATACTCCTTCAACTTCAGTCAGACCATTCACTATTTCAT ATCTCTTAGCATACAGCGGCTCATACAGCTTCAAATATTTTGCTTCCAGTTCTGCCTTTTCTTCCAAATACTTGGCCTCCAACTCATCATGTTG ACTCTGAAGATCCTTAAGAACAGCAACACGATGCCTAACGTTAGCCGAAAGTGTGTCCAAGATATCCGGATGTTGTCCACTCAAATTGTTAAGC TTGTTCTTGAGGACATTAACAAGGCCAGCACGATCTTCAGCGCTAAGAGCAGCAGATAGATCTGTCATGTTGAATTCAGCTTGTTGTTGTTGTT GTTGTGGATTATCACTCATTTTAACTAATTGATCTAACTCAATTAAAACCCCTAACAAAAGTGTGTGTGAGAGAGATTAAATTAGGGCAAAATG ATGATGGAGGTGCCAACTGGTGGTACTTTTTGTGTGCTGTGCTGGATTTCAGTGTTAATTTGTTTGTTGAAACGGTTTTATTATTAGATTATTC AAGTG |
Primers for UN70010 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GCCGAAAGTGTGTCCAAGAT | 60.119 | 20 | CTCCATCATCATTTTGCCCT | 59.894 | 20 | 248 | 608 | 855 |
2 | GAACAGCAACACGATGCCTA | 59.871 | 20 | CTCCATCATCATTTTGCCCT | 59.894 | 20 | 274 | 582 | 855 |
3 | GCCGAAAGTGTGTCCAAGAT | 60.119 | 20 | ACCTCCATCATCATTTTGCC | 59.756 | 20 | 250 | 608 | 857 |