Simple sequence repeat (SSR)
>UN68792 TTTTTTGCAACTGACTTGCCGCCTTAGCTAAAAAAAACTGTGATTTACCAACAAACGCTAATCATCATTTATTTCCAAACGAGACCAAACTTCC ATCAGTTACACACTCGTTAGCTACACAAACACTTTCACGGCCCTGCCATGGTTACCAGAAAACCTCTCCGGCAAAACCATTCAAAAACTTTACA CAATACTCACCATTGTATATATCTACCTAATAACTCGATAGATGACCCTATGAATACAAAGAAGATAGCAAACAATACTCCAACAATAGAAAAA TAAAGAATACCCTTACTACTACTACTACTCGATCTTGATGGTTTTGGTTTCTCTAACCTTTTCTCGACGGCAGCAACAGCAGCAGCTAGATTTA TGTTTCTGCCCTTGCTAAAACTAGACATTCGCTCAAACGCCCGGTTCACAAGTGCACTGCTTTCAGCGGCTGAAGCTGGAGTGGTTGGTATCGA GTCCACAAACGACCACAAAGTGGATGAAAGCCATGAATTGGTACCATTGTCCATGTTGGTTTGGGGACATTGATTTACATTATATTCTAGTTTT CCAGGATTTTCTTCAATTACAACACCTAGAAACATAAAAGAAAAATATGCATGATTAGGTAATGATCTTAATAGTCTTGAACCGCTCATGAAAC GGCAGAAGAGCTCTTAAAAAGCCTGGTCTTGAACTCCACGAGTCGTGCTCGAGAGCTCTTGCCATTTTCCATCTGATGATGCCTGAGAAACGTT CTGGTAACTAGTCGTGATACTACTCTCTCCTTGGTCATGATTCCAAAGATCATAACTCATCTGAAGCTCATCATTGTCGTGATTCACGACTTCG CTCACAAGACCCGAGTTTGCGGGCCCAAATTCAAGGTTATCCGTATAAGCTGGCTGAAGTTCAAAGTGTTGAGATCCAAACGCATCAACTTCCT GGTAAAAATCGAACTCCGATAAAGAATCAAAACTACATTTTTCGGGTTCCGGGCCAAGCAAATCGTTCATTTCCAGAAAATCTTCCTCAACCAC CAACGGCTGCGGTTCTGGTTCCAGACCCATATTGGCCTTTTCTGTAATTTGGGGAAGCTGTGGGAGAACTTCTGGTTCAAAGATCCTGTTCAAG AACTCGATGTCGTCATTCGATAACGGCACTTCTTCCTCACGGGCATTTTTAAAATCATTTATGGGAATCTGTTGATGCTTTTGCACTAAAAGAG TCTCCACATCCAAACAATCATCGTCACTCCATTCTTCCTCTATAAACGGTGCACCATACTGCTCCCCATTCTTAGGCCCGGGCCCACTTTTCTT GAATACCTTGTACAAGACGTAGTGGTCTTGAGCATATGGGCATCTTCGAAGCTCTTCTTCATCCATAGTGTACTCATGCATAACCCAGTCGGTA CGCAAACCAGAGGGTGCACGACCCTGGTAATAAACCAGGGTCTTTTTATTCCCGACTGATGATGATTTTCTTTTGATAGTTCGATCTTTTCCAG TTGCTTTCCAGTAGCCGTTCATTGTTGCTCTGCTTGATCTTGCGCCATTCGGGTACCTTCTGTCTCGCGGGCTGAAAAAGAACCATTGCCGATC ACCGCTTTTCAATTTGGATTGCCCAGGCAGCTCTTCTGGGTCCCACTTATAAACATCAACTTCGCCAATAATATCCATCTTCAAAGATCTCCTG CAGATCTTCCTCTTCAGATAATAAAGAACCAATTCTTCATCAGTTGGATGAAACCTA |
Primers for UN68792 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CGGCAAAACCATTCAAAAAC | 60.335 | 20 | TGCCGTCGAGAAAAGGTTAG | 60.378 | 20 | 192 | 163 | 354 |
2 | CGGCAAAACCATTCAAAAAC | 60.335 | 20 | CTGCCGTCGAGAAAAGGTTA | 60.378 | 20 | 193 | 163 | 355 |
3 | CCAAACGAGACCAAACTTCC | 59.569 | 20 | TGCCGTCGAGAAAAGGTTAG | 60.378 | 20 | 280 | 75 | 354 |