Simple sequence repeat (SSR)
>UN03540 CCAAGAAACAGACTGCATTAAAAGTTGTTAACGATAGCAAAACACATATTTGTTGCTATTACAGCTACAAGAGAAACTAATCGGCTGTTCTGCT AGACATTCTCAAGCTTATAACATATACAATGCTAGACAATCTTCCACACGTACAAATGACATGCATTACAAAACATTCGTGTTAAAATGACTAA CCGGTTGAGATGACTCAAATCATGATGAATGTCATTCACATGCAGGTTTTGTATCAAAGCTACTGAGACAGATCGCAAAAGCTTGGTAAGCAGA AAGAGGGTACCGATAATCCATGGTGAAAATGTCTTTCCCAATCTTCCCAAATTGCAGGATCACTTTATCTTGTTCTGCAGCCGACACATTGTGA GAAGGATCAACAGAAGCTACAAGCTGGAAATTCTTCACAGACGCTACAGTCACACGGCCTTTAAAATTCAAACACCAGCATTGTAATTGCTCAT GCCATCTAGGAGCTTTGTTTTTTAGCATCAAAGAGTCGACGCAAATGGGTCCTGAAACAGATGAGATTGGTCCTGATACAGATGAGATGGGTCT TGATACAGATGAGATGGCTCCCGATACAGATGAGGTTGAACGATCAAAGTTCAGATCCTTGCTTTTAAAGGATGGTGCGGAGAGTGAATTTGTG TCATCAAATGAGTGTGGGAAAGATTTTGGAGTTGGAGCAGAGCCCCCTTCTTGGATCGAGGAAATAGGTATAGAATGCATCACACAATTCATTC TTCTTGGGCCACGTGTACGCAAAACATTGAGTTCATAGGAGATTGTGGCTATGCTATAGCTACAAGCGGGTACTCTAGGAGACACTTGTTTTTT ATTAAATCTTTGACTTGCACGGTTATTATTAGGTTGAATTGATGTGTCGCTTGGAGGTTGGCTGTCATAAATAGTGAACTTGGTTCCTAGAAAA TTGGACCTTAGTTTGCCAACATAGGTTGAACTAGCACGTGAGAAATCATCTGCAACCAATGAGATAGCAAACTCTGTACGTGTTGCCTTTCTGA TTTTCTTTGCGGCCAAAAGCAGCTTATCACTTTCATCCTCAGAAGGGGTCAGCCCAAAGTACAATCGATGCGTAGAAGTTGCTCTATCTCTTCT TATGTAACACTGAATTGGAGCATCTCGAGGACCAGGCTGCTTCAACGATATAGGAAAGGTCAACCTCCCACACTCCTCGGGAGTCTTAACAATC TCCTTAGTAATATCTCTCCACGACTTACAAACCGAAGCACAATAAACCACAACCGTTCTGGCCGGCCACGAGGTCTCGCTCTCTTCAACTCTAC GGATGATATCCAAAAGCAATTCAGGAGGCAAATTGGCCCATTGACCTTGGTCAAATAGTTGGGATGGAAGAGCTACATCAGGTGCAATATGTGA TCTAGTTCTACTTCTCCAGTGTCTACCTTCAATCCCTCGTCTTGATATACTCCCTATCCCGTCTCTCATCTCCCTCAATTCGCGCACTATTCCT TTGAATGACATCTTCTTCTTCTTCTTTATTATTATAATAATTTATCATGCCAATCTTAAAACTCCCTTCAAAAGAGAATCCGGATAGAGGTGAA TGACACGTGTCAGAACGGAAGATGAACAGATCGGATAAATAGATGTAATCGATTCATAATTAATTGTATAATAAGATAGATCTAATTGTTTTTT GTGGTGGTGATTACGGTTACGGTGGTGCCGTGGATTCCGGCGGGAAATCCGGCTGGGTTCGGTGGTGATGAGATGAAAAGAAATGAAAATGTTG ACGGTGTTAATGATATGTATGTGTGTG |
Primers for UN03540 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | ATCCCGTCTCTCATCTCCCT | 60.035 | 20 | CCGATCTGTTCATCTTCCGT | 60.073 | 20 | 167 | 1466 | 1632 |
2 | ATCCCGTCTCTCATCTCCCT | 60.035 | 20 | CCGTAACCGTAATCACCACC | 60.11 | 20 | 249 | 1466 | 1714 |
3 | ATCCCGTCTCTCATCTCCCT | 60.035 | 20 | CCACCGTAACCGTAATCACC | 60.11 | 20 | 252 | 1466 | 1717 |