Simple sequence repeat (SSR)
>UN64500 TTGTAGGAACCTTTTTTTGATTACCAACTCATTTGAGCCACCGATTTTGCCAAGTTCTCCATTTGAGATTTCCTTACGGCTTTGAAAGTTATGT GATAACTTCTAAAGCCAATAAAAACATACATTATTGTTACAACTGAATTATATACGCAGCAACAACAACAACAAAAACAACAGAACCATACATG CATGTATTCATTCTAACATTTCTGATCTCACAAACCATTTCACATCCATGGTCGATCAATACATGTCGATATTTATGCATCCCTTATACCATAA TATAAGTGAAGTTCTATGAAATGTTCACTTGTTCATGTGTTGAACCATCCATGGGGGCATGATAGTAAGTGGTTGAGCTTGTCTCGGGATTTCT TCTACTTCTGCCTGGTGCGTATCGCAGTTGTTTAAGATGCCCAGGTGAAGCGAGGGCACGGCAGCATGGATTTGAGGCTCTTTCTCGTGATGTG CTGCATCTTTCTCCTTTTCCTTAATCTTCTTTTGGAGGACGGAAATTGATTCAAACATCAGTTGATTCTTTCTCAACCTAACGTGTTTAAGAGC TGTATCAAGTTGCTGCTCCAAACCTTGAAGCTCTTTGAGAGTCAAGGAATCAAGTTCTTCTCCCATCAAATGCCTTTTTGATTTCTGCAAAAGC TCAATTCTAGCTTTGAGCTTGGCGTGTTCCAGAGTCCAGCTTCCTTGTGATTCGTTATGGGTTGAAGTAAGTTGCATCTCTGCATACGAGTATC TTTCATACCTCTCAAGGATCCTGTCCATTGTTGAATCCGTAGAGTATTCGCAAAGCTTTCCTTTTGTGGAAAACACAATCAGCGCTACATCAGC ATCACACAGAACGGAGATCTCATGAGCTTTCTTCAACAATCCGGAGCGGCGTTTGGAGAAAGTCACTTGTCGGTTGATCTTGTTCTCTATCCTC TTCAGAGTAACTCTTCCTCTACCCATTTTTTTTTTGGTGAGCTAAGAAAAGGATTTTTTTCCCTTTATCTCTCTAAGTGTTTCTCTCACACACA CAAATACAATTTTGGTAT |
Primers for UN64500 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CTCATTTGAGCCACCGATTT | 60.074 | 20 | TCGACCATGGATGTGAAATG | 60.33 | 20 | 216 | 28 | 243 |
2 | CACCGATTTTGCCAAGTTCT | 60.11 | 20 | TCGACCATGGATGTGAAATG | 60.33 | 20 | 205 | 39 | 243 |
3 | ACCAACTCATTTGAGCCACC | 59.973 | 20 | GATCGACCATGGATGTGAAA | 59.3 | 20 | 223 | 23 | 245 |