Simple sequence repeat (SSR)
>UN63880 CATTGTTCAAAAACCTAGTGTCACTCATCCCTTGCTTCTCATAGTTGTTGTACGTATTGGCATCATTTGTTTGCATGAACTCTTCTTGGTTTTG AGAGTTGTACATGTTGTTGTTGTTGTTGTTGTCACCCTTGTAGGCTTGTGGCTCATAGCTAAATTCATTAGGGATGTCTTGGGTACTACTATGA ATTGGTGTGGTGTATGCCACAGGGTTGTAGTTTTCGGGTAGGTTGGCGGGTAGGTAATTATTGTTATTATTGTTGTTTTCAAGGTTATTGTTGG TAGTGGTTGCGGACGGTGGAAGTTGGCCAGATTCGTGGCCAAACAATCCGTAACCACTACCTTCAGTAGTTTCTCGGGTTTGTGGGACAAATTT TAGGTCTTGCTCATTGGTGTTTTGATTAGTGTTCAAGGGTTGTGATTCTTGAGGGATGTTGTTAGAGACTTTAGCAAAGAATTGGCTTTCTCTT GCATGGATGGTGGTGAGTGAGAGTGCTAGGGTTAGGAAAACAAAGAATGCAATGGAAGCCATTGGAGAGTGTTTTTTGGTCTTTGTGGTTCGAG TTTGTATGTATTCTTGGTTTATATAGCA |
Primers for UN63880 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TTGGCATCATTTGTTTGCAT | 59.937 | 20 | GATTGTTTGGCCACGAATCT | 59.939 | 20 | 274 | 57 | 330 |
2 | TTGGCATCATTTGTTTGCAT | 59.937 | 20 | AATTACCTACCCGCCAACCT | 59.725 | 20 | 191 | 57 | 247 |
3 | GGCATCATTTGTTTGCATGA | 60.476 | 20 | GATTGTTTGGCCACGAATCT | 59.939 | 20 | 272 | 59 | 330 |